Sequence
atgc intronic sequence ATGC exonic sequenceTTGAAAACAATTAAGAAGAAGCTTATCCGCAAGGCCCTTGATATGATTCGTAAGATCGCCGATGAGGATCCTGATGAGTCTAATGATAAAGACAAGAAAGgtatggtgtcgttaatgtcacaatcttgttctaacttccagaaaatatttttctcccagaagcaatttgcttttaaattttaattgattgctgcctatcttgcaatggattctagtaactgttgctgctctctcatttctcttgccatctttattgatgttgagttccaatatattgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g14500.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA17G37820.1 (Glycine max), 5'ss of exon 11
-TTGAAAACAATTAAGAAGAAGCTTATCCGCAAGGCCCTTGATATGATTCGTAAGATCGCCGATGAGGATCCTGATGAGTCTAATGATAAAGACAAGAAAGgtatggtgtcgttaatgtcacaatcttgttctaacttccagaaaatatttttctcccagaagcaatttgcttttaaattttaatt--gattgctgcctatcttgcaatggattc-tagtaactgttgctgctct----ctcatttctcttgccatctttattgatgttgagttccaat--atattgcag-----------
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TCTAAAGACAATCAAGAAGAAACTTATTAGGAAAGCCCTTGATATGATCCGTAGGATTGCTGATGAGGATCCTGATGAGTCCACTGACAAAGAAAAGAAAggtatggtgtaataattatgagtttcatctgttggaatccctatttt-tttatgggctaaggtttaccagaactcgtgtatcagtctagaatacttgtcttgttgtgtttgctttgtcataccttttcataatgtaagaggcgtttcttaaattctgttcattgactttgtacttccatcaatattaaatattgatgcaca
upper sequence: Vv18s0001g14500.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA14G40320.3 (Glycine max), 5'ss of exon 11
TTGAAAACAATTAAGAAGAAGCTTATCCGCAAGGCCCTTGATATGATTCGTAAGATCGCCGATGAGGATCCTGATGAGTCTAATGATAAAGACAAGAAAGgtatggtgtcgttaat-gtcacaatcttgttctaacttccagaaaatatttttctcccagaagcaatttgcttttaaattttaattgattgctgcctatcttgcaatgg-attctagtaactgttgctgctctctcatttctcttgccatcttta----ttgatgttgagttccaatatattgcag
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CTGAAGACAATCAAGAAGAAACTTATTAGGAAAGCCCTTGATATGATCCGCAGGATTGCTGATGAGGATCCTGACGAGTCAACTGACAAAGAAAAGAAAGgtatggt----ttaatagttatgagtttcatctg--ttggaatccctatttttttatgggctaaggttgacc---aaaacacgtgtaattg-tgtttgctttgttataccatttcaaaatgtaaggtgtttcttgaattctgttcattgactttgtacttccatcttaaatattgatgcacagaag
upper sequence: Vv18s0001g14500.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA14G40320.4 (Glycine max), 5'ss of exon 11
TTGAAAACAATTAAGAAGAAGCTTATCCGCAAGGCCCTTGATATGATTCGTAAGATCGCCGATGAGGATCCTGATGAGTCTAATGATAAAGACAAGAAAGgtatggtgtcgttaat-gtcacaatcttgttctaacttccagaaaatatttttctcccagaagcaatttgcttttaaattttaattgattgctgcctatcttgcaatgg-attctagtaactgttgctgctctctcatttctcttgccatctttat----tgatgttgagttccaatatattgcag
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CTGAAGACAATCAAGAAGAAACTTATTAGGAAAGCCCTTGATATGATCCGCAGGATTGCTGATGAGGATCCTGACGAGTCAACTGACAAAGAAAAGAAAGgtatggt----ttaatagttatgagtttcatctg--ttggaatccctatttttttatgggctaaggttgacc---aaaacacgtgtaattg-tgtttgctttgttataccatttcaaaatgtaaggtgtttcttgaattctgttcattgactttgtacttccatcttaaatattgatgcacag---
upper sequence: Vv18s0001g14500.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT4G24190.1 (Arabidopsis thaliana), 5'ss of exon 11
TTGAAAACAATTAAGAAGAAGCTTATCCGCAAGGCCCTTGATATGATTCGTAAGATCGCCGATGAGGATCCTGATGAGTCTAATGATAAAGACAAGAAAGgtatggtgtcgttaatgtcacaatcttgttctaacttccagaaaatatttttctcccagaagcaatttgcttttaaattttaattgattgctgcctatct-tgcaatggattctagtaactgttgctgctctctcatttctcttgccatctttattgatgttgagttccaatatattgcag
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TTAAAGACAATTAAGAAGAAGCTTATCCGAAAGGCGCTTGATATGATCCGCAAGCTTGCTGAAGAAGATCCTGATGAAATCCATGATGATGAGAAAAAAGgtat-------tccataaaacaagtttctt-------------ggtatcaatccactttgaccgttccacttttttttaccatttggtagcttcatctttctgaaacatggtctaa-gcttattgacttgttggcacgcag----------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161715138|gb|FC064271.1|FC064271EST: TAAGATCGCCGATGAGGATCCTGATGAGTCTAATGATAAAGACAAGAAAG ATGTTGAAAAGTCCAGTGATGATGATGAGAAGAAAGGTCAGTATGCAAAGT
genomic: TAAGATCGCCGATGAGGATCCTGATGAGTCTAATGATAAAGACAAGAAAGgtatggtgtc ... tatattgcagATGTTGAAAAGTCCAGTGATGATGATGAGAAGAAAGGTCAGTATGCAAAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGAAAACAATTAAGAAGAAGCTTATCCGCAAGGCCCTTGATATGATTCGTAAGATCGCCGATGAGGATCCTGATGAGTCTAATGATAAAGACAAGAAAGgtatggtgtcgttaatgtcacaatcttgttctaacttccagaaaatatttttctcccagaagcaatttgcttttaaattttaattgattgctgcctatcttgcaatggattctagtaactgttgctgctctctcatttctcttgccatctttattgatgttgagttccaatatattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA