1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTCAGTGGCGGGACAAACTCACCCAATTTCGTTCTAAGAGGAACTGGACATAACAGgcatgtcatgatttttatacttcgtaatccaatgccagtacgcaggtttcaatttcttgcttgcttgcttgcttcacctgcaattaatctaatggaggtttttttttttttttttgggtgtttcag
species | Vitis vinifera |
transcript | Vv18s0001g12960.t01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GGCGGGACAAACTCACCCAATTTCGTTCTAAGAGGAACTGGACATAACAG TTCCAAGACTTTAGTTTGTAAATAGATAAAACATTGTTCAAGGCTGATGAGEST: gi|45770383|gb|CN006235.1|CN006235
genomic: GGCGGGACAAACTCACCCAATTTCGTTCTAAGAGGAACTGGACATAACAGgcatgtcatg ... ggtgtttcagTTCCAAGACTTTAGTTTGTAAATAGATAAAACATTGTTCAAGGCTGATGAT
EST: GGCGGGACAAACTCACCCAATTTCGTTCTAAGAGGAACTGGACATAACAG TTCCAAGACTTTAGTTTGTAAATAGATAAAACATTGTTCAAGGCTGATGAGEST: gi|22007151|gb|BQ792185.1|BQ792185
genomic: GGCGGGACAAACTCACCCAATTTCGTTCTAAGAGGAACTGGACATAACAGgcatgtcatg ... ggtgtttcagTTCCAAGACTTTAGTTTGTAAATAGATAAAACATTGTTCAAGGCTGATGAT
EST: GGCGGGACAAACTCACCCAATTTCGTTTTAAGAGGAACTGGACATAACAG TTCCAAGACTTTAGTTTGTAAATAGATAAAACATTGTTCAAGGCTGATGAGEST: gi|26261297|gb|CA812360.1|CA812360
genomic: GGCGGGACAAACTCACCCAATTTCGTTCTAAGAGGAACTGGACATAACAGgcatgtcatg ... ggtgtttcagTTCCAAGACTTTAGTTTGTAAATAGATAAAACATTGTTCAAGGCTGATGAT
EST: GGCGGGACAAACTCACCCAATTTCGTTTTAAGAGGAACTGGACATAACAG TTCCAAGACTTTAGTTTGTAAATAGATAAAACATTGTTCAAGGCTGATGAGEST: gi|254915447|gb|GR904878.1|GR904878
genomic: GGCGGGACAAACTCACCCAATTTCGTTCTAAGAGGAACTGGACATAACAGgcatgtcatg ... ggtgtttcagTTCCAAGACTTTAGTTTGTAAATAGATAAAACATTGTTCAAGGCTGATGAT
EST: GGCGGGACAAACTCACCCAATTTCGTTCTAAGAGGAACTGGACATAACAG TTCCAAGACTTTAGTTTGTAAATAGATAAAACATTGTTCAAGGCTGATGAGEST: gi|46919387|gb|CN548716.1|CN548716
genomic: GGCGGGACAAACTCACCCAATTTCGTTCTAAGAGGAACTGGACATAACAGgcatgtcatg ... ggtgtttcagTTCCAAGACTTTAGTTTGTAAATAGATAAAACATTGTTCAAGGCTGATGAT
EST: GGCGGGACAAACTCACCCAATTTCGTTTTAAGAGGAACTGGACATAACAG ATCCAAGACTTTAGTTTGTAAATAGATAAAACATTGTTCAAGGCTGATGAGEST: gi|32246108|gb|CD711927.1|CD711927
genomic: GGCGGGACAAACTCACCCAATTTCGTTCTAAGAGGAACTGGACATAACAGgcatgtcatg ... ggtgtttcagTTCCAAGACTTTAGTTTGTAAATAGATAAAACATTGTTCAAGGCTGATGAT
EST: GGCGGGACAAACTCACCCAATTTCGTTCTAAGAGGAACTGGACATAACAG TTCCAAGACTTTAGTTTGTAAATAGATAAAACATTGTTCAAGGCTGATGAGEST: gi|26260812|gb|CA811875.1|CA811875
genomic: GGCGGGACAAACTCACCCAATTTCGTTCTAAGAGGAACTGGACATAACAGgcatgtcatg ... ggtgtttcagTTCCAAGACTTTAGTTTGTAAATAGATAAAACATTGTTCAAGGCTGATGAT
EST: GGCGGGACAAACTCACCCAATTTCGTTCTAAGAGGAACTGGACATAACAG TTCCAAGACTTTACTTTGTAAATACATAAAACATTGTTCAAGGCTGATG
genomic: GGCGGGACAAACTCACCCAATTTCGTTCTAAGAGGAACTGGACATAACAGgcatgtcatg ... ggtgtttcagTTCCAAGACTTTAGTTTGTAAATAGATAAAACATTGTTCAAGGCTGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCAGTGGCGGGACAAACTCACCCAATTTCGTTCTAAGAGGAACTGGACATAACAGgcatgtcatgatttttatacttcgtaatccaatgccagtacgcaggtttcaatttcttgcttgcttgcttgcttcacctgcaattaatctaatggaggtttttttttttttttttgggtgtttcag
- - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - AGAGGA