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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGAATTGGGTTACTTATTCTGCAACAGCTCAGTGGAATCAATGGTGTTCTATTCTATTCCACTACCATTTTTGAATCTGCTGgtaagcataaactgatgtcctaatcttacagttttaggcgtagtgcaccagcatcgtggagttatgattatcactttattttccgagtttcttttgactg...

Basic information

species Vitis vinifera
transcript Vv18s0001g12560.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g12560.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT1G75220.1 (Arabidopsis thaliana), 5'ss of exon 11
GTGGGAATTGGGTTACTTATTCTGCAACAGCTCAGTGGAATCAATGGTGTTCTATTCTATTCCACTACCATTTTTGAATCTGCTGgtaagcataaactgatgtcctaatcttacagttttaggcgtagtgcaccagcatcgtggagttatgattatcac-tttattttccgagtttcttttgactg
|| || || ||||| ||| | || ||||| ||  ||||||| |||||||| ||||||||||||| ||| || ||||||||||| |||| |  |   || |   |  || |||   |||| |    || | |   |   |       |     || |||  ||||                      
GTTGGTATAGGGTTGCTTGTACTTCAACAACTTGGTGGAATTAATGGTGTCCTATTCTATTCCAGTACAATATTTGAATCTGCAGgtagggtttttctaacacctgaagcttcttgtttcatat-tattactttaatttttcattttccgtgttttcatgtttag---------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349811010|gb|FQ405998.1|FQ405998
EST:     TGGAATCAATGGTGTTCTATTCTATTCCACTACCATTTTTGAATCTGCTG                         GGGTTTCATCAAGTAATTTGGCTACATGTTTAGTTGGGGTTATTCAG
genomic: TGGAATCAATGGTGTTCTATTCTATTCCACTACCATTTTTGAATCTGCTGgtaagcataa ... atgcaaacagGGGTTTCATCAAGTAATTTGGCTACATGTTTAGTTGGGGTTATTCAG
EST: gi|110384138|gb|EC948555.1|EC948555
EST:     TGGAATCAATGGTGTTCTATTCTATTCCACTACCATTTTTGAATCTGCTG                         GGGTTTCATCAAGTAATTTGGCTACATGTTTAGTTGGGGTTATTCAG
genomic: TGGAATCAATGGTGTTCTATTCTATTCCACTACCATTTTTGAATCTGCTGgtaagcataa ... atgcaaacagGGGTTTCATCAAGTAATTTGGCTACATGTTTAGTTGGGGTTATTCAG
EST: gi|33404093|gb|CF209720.1|CF209720
EST:     TGGAATCAATGGTGTTCTATTCTATTCCACTACCATTTTTGAATCTGCTG                         GGGTTTCATCAAGTAATTTGGCTACACGTTTAGTTGGGGTTATTCAG
genomic: TGGAATCAATGGTGTTCTATTCTATTCCACTACCATTTTTGAATCTGCTGgtaagcataa ... atgcaaacagGGGTTTCATCAAGTAATTTGGCTACATGTTTAGTTGGGGTTATTCAG
EST: gi|110382391|gb|EC939356.1|EC939356
EST:     TTTGAATCTGCTG                         GGGTTTCATCAAGTAATTTGGCTACATGTTTAGTTGGGGTTATTCAG
genomic: TTTGAATCTGCTGgtaagcataa ... atgcaaacagGGGTTTCATCAAGTAATTTGGCTACATGTTTAGTTGGGGTTATTCAG
EST: gi|351014223|gb|FQ434812.1|FQ434812
EST:     TGGAATCAATGGTGTTCTATTCTATTCCACTACCATTTTTGAATCTGCTG                         GGGTTTCATCAAGTAATTTGGCTACATGTTTAGTTGGGGTTATTCAG
genomic: TGGAATCAATGGTGTTCTATTCTATTCCACTACCATTTTTGAATCTGCTGgtaagcataa ... atgcaaacagGGGTTTCATCAAGTAATTTGGCTACATGTTTAGTTGGGGTTATTCAG