1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TGAAAATGTGGGCCTCCTTGGACTCACACACATAGGGAGCAGAAGGGTGGTGCAGATATCAACTGCTTTCATGTTCTTCTTCTCCATATTTGgtctgttttttgttttttacttcccccattaattctattaaatcattgcctgggattatcactgaatgtttgattgagttatcctgcatctttcag
species | Vitis vinifera |
transcript | Vv18s0001g11260.t01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AAGGGTGGTGCAGATATCAACTGCTTTCATGTTCTTCTTCTCCATATTTG GGAAGTTTGGTGCCTTCTTTGCATCTATTCCTTTACCAATATTTGCTGCCAEST: gi|22015462|gb|BQ800496.1|BQ800496
genomic: AAGGGTGGTGCAGATATCAACTGCTTTCATGTTCTTCTTCTCCATATTTGgtctgttttt ... catctttcagGGAAGTTTGGTGCCTTCTTTGCATCTATTCCTTTACCAATATTTGCTGCCA
EST: AAGAGTGGTGCAGATATCAACTGCTTTCATGTTCTTCTTCTCCATATTTG GGAAGTTTGGTGCCTTCTTTGCATCTATTCCTTTACCAATATTTGCTGCCAEST: gi|27581681|gb|CB004376.1|CB004376
genomic: AAGGGTGGTGCAGATATCAACTGCTTTCATGTTCTTCTTCTCCATATTTGgtctgttttt ... catctttcagGGAAGTTTGGTGCCTTCTTTGCATCTATTCCTTTACCAATATTTGCTGCCA
EST: AAGGGTGGTGCAGATATCAACTGCTTTCATGTTCTTCTTCTCCATATTTG GGAAGTTTGGTGCCTTCTTTGCATCTATTCCTTTACCAATATTTGCTGCCAEST: gi|46917625|gb|CN546954.1|CN546954
genomic: AAGGGTGGTGCAGATATCAACTGCTTTCATGTTCTTCTTCTCCATATTTGgtctgttttt ... catctttcagGGAAGTTTGGTGCCTTCTTTGCATCTATTCCTTTACCAATATTTGCTGCCA
EST: AAGGGTGGTGCAGATATCAACTGCTTTCATGTTCTTCTTCTCCATATTTG GGAAGTTTGGTGCCTTCTTTGCATCTATTCCTTTACCAATATTTGCTGCCAEST: gi|110413208|gb|EC978987.1|EC978987
genomic: AAGGGTGGTGCAGATATCAACTGCTTTCATGTTCTTCTTCTCCATATTTGgtctgttttt ... catctttcagGGAAGTTTGGTGCCTTCTTTGCATCTATTCCTTTACCAATATTTGCTGCCA
EST: AAGAGTGGTGCAGATATCAACTGCTTTCATGTTCTTCTTCTCCATATTTG GGAAGTTTGGTGCCTTCTTTGCATCTATTCCTTTACCAATATTTGCTGCCAEST: gi|30328659|gb|CD011921.1|CD011921
genomic: AAGGGTGGTGCAGATATCAACTGCTTTCATGTTCTTCTTCTCCATATTTGgtctgttttt ... catctttcagGGAAGTTTGGTGCCTTCTTTGCATCTATTCCTTTACCAATATTTGCTGCCA
EST: AAGGGTGGTGCAGATATCAACTGCTTTCATGTTCTTCTTCTCCATATTTG GGAAGTTTGGTGCCTTCTTTGCATCTATTCCTTTACCAATATTTGCTGCCAEST: gi|110718405|gb|EE095198.1|EE095198
genomic: AAGGGTGGTGCAGATATCAACTGCTTTCATGTTCTTCTTCTCCATATTTGgtctgttttt ... catctttcagGGAAGTTTGGTGCCTTCTTTGCATCTATTCCTTTACCAATATTTGCTGCCA
EST: AAGAGTGGTGCAGATATCAACTGCTTTCATGTTCTTCTTCTCCATATTTG GGAAGTTTGGTGCCTTCTTTGCATCTATTCCTTTACCAATATTTGCTGCCAEST: gi|110717478|gb|EE093371.1|EE093371
genomic: AAGGGTGGTGCAGATATCAACTGCTTTCATGTTCTTCTTCTCCATATTTGgtctgttttt ... catctttcagGGAAGTTTGGTGCCTTCTTTGCATCTATTCCTTTACCAATATTTGCTGCCA
EST: AAGGGTGGTGCAGATATCAACTGCTTTCATGTTCTTCTTCTCCATATTTG GGAAGTTTGGTGCTTTCTTTGCATCTATTCCTTTACCAATATTTGCTGCCAEST: gi|22013116|gb|BQ798150.1|BQ798150
genomic: AAGGGTGGTGCAGATATCAACTGCTTTCATGTTCTTCTTCTCCATATTTGgtctgttttt ... catctttcagGGAAGTTTGGTGCCTTCTTTGCATCTATTCCTTTACCAATATTTGCTGCCA
EST: AAGGGTGGTGCAGATATCAACTGCTTTCATGTTCTTCTTCTCCATATTTG GGAAGTTTGGTGCCTTCTTTGCATCTATTCCTTTACCAATATTTGCTGCCA
genomic: AAGGGTGGTGCAGATATCAACTGCTTTCATGTTCTTCTTCTCCATATTTGgtctgttttt ... catctttcagGGAAGTTTGGTGCCTTCTTTGCATCTATTCCTTTACCAATATTTGCTGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAAATGTGGGCCTCCTTGGACTCACACACATAGGGAGCAGAAGGGTGGTGCAGATATCAACTGCTTTCATGTTCTTCTTCTCCATATTTGgtctgttttttgttttttacttcccccattaattctattaaatcattgcctgggattatcactgaatgtttgattgagttatcctgcatctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT