Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAATTCACAGTGAATGTTGTGAGGAATCTTAGCCAGAAGACCCATTGGCGCATCAAGACTCACCTTGCCATCAGCCACTTGGATGTCAATAAGATTAATgtgagtgagcaaaaattgctttatctacctgtcaactagatcttgcttacttgagcacttctttttggtcctttcacttcatttgatgaattgggtcctctcttttctgctcacag

Basic information

species Vitis vinifera
transcript Vv18s0001g07500.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g07500.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA06G10050.1 (Glycine max), 5'ss of exon 11
CAAATTCACAGTGAATGTTGTGAGGAATCTTAGCCAGAAGACCCATTGGCGCATCAAGACTCACCTTGCCATCAGCCACTTGGATGTCAATAAGATTAATgtgagtgagcaaaaattgctttatctacctgtcaactagatcttgcttacttgagcacttctttttggtcctttcacttcatttgatgaattgggtcctctcttttctgctcacag
||| || |  || ||||||||||||||||||||  ||||  | |||||||||||||||||||||||||| ||||| ||||||||||| || |||||||||||||||        |||   || |||          || |  ||| | |   |  |  ||  |     ||   |||  | |    |  | |    ||  ||  |||||     |||
CAATTTGAGTGTAAATGTTGTGAGGAATCTTAGTAAGAAATCTCATTGGCGCATCAAGACTCACCTTGCTATCAGTCACTTGGATGTTAACAAGATTAATgtgagt--------att--cttgtct---------ttaaaaattgttcag--ggactattgatggctatctcatcatctgaaaacaaaagtaatctctcctagtttctttatgcag

upper sequence: Vv18s0001g07500.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA04G10050.1 (Glycine max), 5'ss of exon 9
CAAATTCACAGTGAATGTTGTGAGGAATCTTAGCCAGAAGACCCATTGGCGCATCAAGACTCACCTTGCCATCAGCCACTTGGATGTCAATAAGATTAATgtgagtgagcaaaaattgctttatctacctgtcaactagatcttgcttacttgagcacttctttttggtcctttcacttcatttgatgaattgggtcctctcttttctgctcacag
||| || |  || ||||||||||||||||||||  ||||  | |||||| ||||||||||||||||||| ||||| ||||||||||| || |||||||||||||||        |||   || |||          || |  ||| | |   ||  |||  |   |  |    |||  | |    |  | |    ||  ||  |||||     |||
CAATTTGAGTGTAAATGTTGTGAGGAATCTTAGTAAGAAATCTCATTGGGGCATCAAGACTCACCTTGCTATCAGTCACTTGGATGTTAACAAGATTAATgtgagt--------att--cttgtct---------ttaaaaattgttcagg-gactactgatagcta-tgtcatcatctgaaaacaaaagtaacatctcctaatttctttatgcag

upper sequence: Vv18s0001g07500.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA04G10060.1 (Glycine max), 5'ss of exon 12
CAAATTCACAGTGAATGTTGTGAGGAATCTTAGCCAGAAGACCCATTGGCGCATCAAGACTCACCTTGCCATCAGCCACTTGGATGTCAATAAGATTAATgtgagtgagcaaaaattgctttatctacctgtcaa-ctagatcttgcttacttgagcacttctttttggtcctttcacttcatttgatgaattgggtcctctcttttctgctcacag
||| || || || ||||||||||| ||||| ||||||||  | |||||||| ||||||| | || |||| ||||| ||||||||||| || || |||||||||||      |  |||| || |  | | |      || |  ||| || |  ||     ||||  || |    ||  ||||||                                  
CAAGTTTACTGTAAATGTTGTGAGAAATCTGAGCCAGAAATCTCATTGGCGTATCAAGAGTTACATTGCTATCAGTCACTTGGATGTTAACAAAATTAATgtgagc-----attattggttcacatgcttaatgttcttggactttctgatgtgtatttttctgattagcatgttt-cttcatgcag------------------------------

upper sequence: Vv18s0001g07500.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA06G10060.1 (Glycine max), 5'ss of exon 11
CAAATTCACAGTGAATGTTGTGAGGAATCTTAGCCAGAAGACCCATTGGCGCATCAAGACTCACCTTGCCATCAGCCACTTGGATGTCAATAAGATTAATgtgagtgagcaaaaattgctttatctacctgtcaactagatcttg--cttacttgagcacttctttttggtcctttcacttcatttgatgaattgggtcctctcttttctgctcacag
||| || ||||| ||||||||||| ||||| ||||||||  | |||||||| ||||||| | || |||| ||||| ||||||||||| || ||  ||||||||||      |  |||| || |  | | |   || | | ||| |  ||| ||   |  | | ||| || |        ||| |                                  
CAAGTTTACAGTAAATGTTGTGAGAAATCTGAGCCAGAAATCTCATTGGCGTATCAAGAGTTACATTGCTATCAGTCACTTGGATGTTAACAAAGTTAATgtgagc-----attattggttcacatgcttaaaaaat-gctctaggactttctgatgtgcatttttctgattaacatgtttcttcgtgcag---------------------------