Sequence
atgc intronic sequence ATGC exonic sequenceAGACCAGTTCCCCTGGTTCATCATCGCCAAGCTTCTCATGGGTGTTTGACCTCAAGGGAATTGCTGAGATGTATCAATCCTATGAAGAAACAAATTTATGgtattcatgttcagaacttgtttttcatcttgaattgatgtcaaatctcatattattcttctaaatacggcttatttctgaagatcttctaatttgataa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g06010.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA11G01670.1 (Glycine max), 5'ss of exon 11
AGACCAGTTCCCCTGGTTCATCATCGCCAAGCTTCTCATGGGTGTTTGACCTCAAGGGAATTGCTGAGATGTATCAATCCTATGAAGAAACAAATTTATGgtattcatgttcagaacttgtttttcatcttgaattgatgtcaaatctcatattattcttctaaatacggcttatttctgaagatcttctaatttgataa---
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CTTCCAGCTCTCCTGGTTCACAATCATCAAGCTTCTCATGGGTGTTTGACCTAAGGGGGATTGCAGAAATGTATCAATCCTATGAAGAAACAAATTTGTGgtacttactgtgatatctatgataacaaagctagctg-taatatattgattattattggccttaattc--tttggttgagatgggttccttcctgcatgattg
upper sequence: Vv18s0001g06010.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA01G44190.1 (Glycine max), 5'ss of exon 11
AGACCAGTTCCCCTGGTTCATCATCGCCAAGCTTCTCATGGGTGTTTGACCTCAAGGGAATTGCTGAGATGTATCAATCCTATGAAGAAACAAATTTATGgtattcatgttcagaacttgtttttcatcttgaattgatgtcaaatctcatattattcttctaaatacggcttatttctgaagatcttctaatttgataa---
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CTTCTGGCTCTCCTGGTTCACAATCATCAAGCTTCTCATGGGTGTTTGACCTAAGGGGGATTGCAGAAATGTATCAATCCTATGAAGAAACAAATTTGTGgtacttactgtgatatctatgataacaatgctagctgcaat-atattgatttttatcggccttaattc--tttggttgagatgggttccttcctgccttgagt
upper sequence: Vv18s0001g06010.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: PP1S90_13V6.1 (Physcomitrella patens), 5'ss of exon 11
AGACCAGTTCCCCTGGTTCATCATCGCCAAGCTTCTCA-TGGGTGTTTGACCTCAAGGGAATTGCTGAGATGTATCAATCCTATGAAGAAACAAATTTATGgtat-tcatgttcagaacttgtttttc---atcttgaattgatgtcaaatctcatatt-----attcttctaaatacggcttatttctgaagat-----cttctaatttgataa----------------------------------------
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-TGAAAGCTGCCAAAGCAGAAGGTCGTTCAGGATATGAGTGGGTGTTTGATCTGGAAGGCATCGCTGACATGTATAAATCCTATGAAGATACAAATTTGTGgtagattatccttcaccttcattatgctaaaccctgtattatcgttacaccacacattttagcattttgataggcgtctctaattttcgccagcgtccgctctcaactttatggtgcatatctctctgactatgcatggtttggcatttgacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30295766|gb|CB972560.1|CB972560EST: CTCAAGGGAATTGCTGAGATGTATCAATCCTATGAAGAAACAAATTTATG GAATATTGTGGAAGATGTACCACGGGGTGTGCATGTGAATTTTTTGAAAGC
genomic: CTCAAGGGAATTGCTGAGATGTATCAATCCTATGAAGAAACAAATTTATGgtattcatgt ... attcatgcagGAATATTGTGGAAGATGTACCACGGGGTGTGCATGTGAATTTTTTGAAAGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGACCAGTTCCCCTGGTTCATCATCGCCAAGCTTCTCATGGGTGTTTGACCTCAAGGGAATTGCTGAGATGTATCAATCCTATGAAGAAACAAATTTATGgtattcatgttcagaacttgtttttcatcttgaattgatgtcaaatctcatattattcttctaaatacggcttatttctgaagatcttctaatttgataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA