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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTCTGATATGGAAGATTGATAAATTTGATTTTGTTGCTTGCATGGGAGCCTTCTTTGGTGTGGTTTTTAAATCTGTTGAGATTGGTCTCTTAATTGCGgtaaagggtcaagatatctgccaccttgaagtcttattgttctagtacatgttaccgacctaattgtcttgattctgttttcacctattgttatggcag

Basic information

species Vitis vinifera
transcript Vv18s0001g04910.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g04910.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os08g31410.1 (Oryza sativa), 5'ss of exon 11
AATTCTGATATGGAAGATTGATAAATTTGATTTTGTTGCTTGCATGGGAGCCTTCTTTGGTGTGGTTTTTAAATCTGTTGAGATTGGTCTCTTAATTGCGgtaaagggtcaa-----gatat--ctgccaccttgaagtcttattgttctagtacatgttaccgacctaa--ttgtcttgattctgttttcacctattgttatggcag
|||||| || |||||  |||| ||| | |||||  || ||||||||||||| |||||||||||||| ||   |||||||||||| ||||| ||||| || ||||    | ||     ||| |  |||||| ||||     || || | | |   ||| |     |   ||  ||  | | |||    |  |    |  |         
AATTCTCATTTGGAAAGTTGACAAAATGGATTTCATTTCTTGCATGGGAGCATTCTTTGGTGTGGTCTTCGCATCTGTTGAGATAGGTCTTTTAATAGCTgtaagcactaaatctttgatttgactgccaacttgccaagttcttttccaaaggcatatagataagtgaaaattcacctaatttctgtgacgttaacag---------

upper sequence: Vv18s0001g04910.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA13G02060.1 (Glycine max), 5'ss of exon 9
AATTCTGATATGGAAGATTGATAAATTTGATTTTGTTGCTTGCATGGGAGCCTTCTTTGGTGTGGTTTTTAAATCTGTTGAGATTGGTCTCTTAATTGCGgtaaagggtcaagatatctgccaccttgaagtcttattgttctagtacatgttaccgacctaattgtcttgattctgttttcacctattgttatggcag
|||| ||||||||||||||||||||||||| |||||||||||||||||||| || ||||| || ||||||   || |||||||| || || |||||||| |||| |    |||| || ||  | | | | |    ||  |  || |     |||      | || || ||     |   ||    ||||||| ||| ||
AATTTTGATATGGAAGATTGATAAATTTGACTTTGTTGCTTGCATGGGAGCATTTTTTGGGGTTGTTTTTGCCTCGGTTGAGATAGGACTTTTAATTGCAgtaa-gtactaagacat-tgttatcct-atgctccataatgttaatgtggtttatga--ttgatagtgtta---ttaactttggatattgttgtggtag

upper sequence: Vv18s0001g04910.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA14G34220.1 (Glycine max), 5'ss of exon 11
AATTCTGATATGGAAGATTGATAAATTTGATTTTGTTGCTTGCATGGGAGCCTTCTTTGGTGTGGTTTTTAAATCTGTTGAGATTGGTCTCTTAATTGCGgtaaagggtcaagatatctgccaccttgaagtcttattgttctagtac-atgttaccgac-ctaattgtcttgattctgttttcacctattgttatggcag
|||| ||||||||||||||||||||||||| |||||||||||||||||||| || ||||| || ||||||   || |||||||| || || |||||||| |||| |   |||||  ||     |   |   || ||| | ||||  |  ||  |   |   || ||||      || |    |    || | ||  || ||
AATTTTGATATGGAAGATTGATAAATTTGACTTTGTTGCTTGCATGGGAGCATTTTTTGGGGTTGTTTTTGCCTCGGTTGAGATAGGACTTTTAATTGCAgtaa-gtaccaaga-gtccaaagcacagttatcctat-gctctatgatgataatgtggtttctgattggtggtgttattaacttggataattttgcggtag

upper sequence: Vv18s0001g04910.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA06G11140.1 (Glycine max), 5'ss of exon 10
AATTCTGATATGGAAGATTGATAAATTTGATTTTGTTGCTTGCATGGGAGCCTTCTTTGGTGTGGTTTTTAAATCTGTTGAGATTGGTCTCTTAATTGCGgtaaagggtcaagatatctgccaccttgaagtcttattgttctagtacatgttaccgacctaattgtcttgattctgttttcacctattg-----ttatggcag
|||| |||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||   || |||||||| || ||  ||||||| |||| |    |  |||  |    | |  |  | ||  || ||||          |    ||  ||   ||  | |  |  |  |  |||      |||||||||
AATTTTGATTTGGAAGATAGATAAATTTGATTTTGTTGCTTGCATGGGTGCCTTCTTTGGGGTTGTTTTTGTCTCGGTTGAGATAGGACTTCTAATTGCTgtaa-gtactactataattaatgctt--agttatttatgctctaaatgtcaaagctagtcttgttcatttcgtacattaattgctaattaatactttatggcag

upper sequence: Vv18s0001g04910.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA04G11580.1 (Glycine max), 5'ss of exon 10
AATTCTGATATGGAAGATTGATAAATTTGATTTTGTTGCTTGCATGGGAGCCTTCTTTGGTGTGGTTTTTAAATCTGTTGAGATTGGTCTCTTAATTGCGgtaaagggtcaagatatctgccaccttgaagtcttattgttctagtacatgttaccgac-ctaattgtcttgattctgttttcacctattgtta-----tggcag
|||| |||| |||||||| ||||||||||||||||||||||||||||| || |||||||| || | ||||   || |||||||  || ||  ||||||| |||| |    |  |||  |   |      |||       || |  |  |   |  | |  ||| |  | || ||| |  | | |   |||| ||     ||||||
AATTTTGATCTGGAAGATAGATAAATTTGATTTTGTTGCTTGCATGGGTGCATTCTTTGGGGTTGCTTTTGTCTCGGTTGAGAAAGGACTTCTAATTGCTgtaa-gtactactataattattaatgcttagtacgtaccttttgctctaaaatgtcaaagctagtcttgttcattttcgtat-attaattgctaaacactggcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351023031|gb|FQ430906.1|FQ430906
EST:     CCTTCTTTGGTGTGGTTTTTAAATCTGTTGAGATTGGTCTCTTAATTGCG                         GTTGCCATATCCTTTGCCAAGATCCTCCTACAAGTTACAAGGCCAAGGACT
genomic: CCTTCTTTGGTGTGGTTTTTAAATCTGTTGAGATTGGTCTCTTAATTGCGgtaaagggtc ... gttatggcagGTTGCCATATCCTTTGCCAAGATCCTCCTACAAGTTACAAGGCCAAGGACT