1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGACATAGGGCAGTTTCATGCTGATGGTTGCCTTGAAATAATTGACCGTAGAAAGGACATAGTTAAACTTCAGCATGGAGAATATTTATCTCTAGGAAAGgtatgcatgatgtaaaataatgtttttcgtttttctttccttttcttctcctttgatttttattttattattattacctttttattttttaaactaataccttcctctacag
species | Vitis vinifera |
transcript | Vv18s0001g02810.t01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GAAAGGACATAGTTAAACTTCAGCATGGAGAATATTTATCTCTAGGAAAG GTTGAGGCTGCTCTCATCGTGAGCCCCTATGTCGACAATATTATGTTGCATEST: gi|110418478|gb|EC984635.1|EC984635
genomic: GAAAGGACATAGTTAAACTTCAGCATGGAGAATATTTATCTCTAGGAAAGgtatgcatga ... tcctctacagGTTGAGGCTGCTCTCATCGTGAGCCCCTATGTCGACAATATTATGTTGCAT
EST: GAAAGGACATAGTTAAACTTCAGCATGGAGAATATTTATCTCTAGGAAAG GTTGAGGCTGCTCTCATCGTGAGCCCCTATGTCGACAATATTATGTTGCATEST: gi|110389647|gb|EC954503.1|EC954503
genomic: GAAAGGACATAGTTAAACTTCAGCATGGAGAATATTTATCTCTAGGAAAGgtatgcatga ... tcctctacagGTTGAGGCTGCTCTCATCGTGAGCCCCTATGTCGACAATATTATGTTGCAT
EST: GAAAGGACATAGTTAAACTTCAGCATGGAGAATATTTATCTCTAGGAAAG GTTGAGGCTGCTCTCATCGTGAGCCCCTATGTCGACAATATTATGTTGCATEST: gi|110407339|gb|EC972939.1|EC972939
genomic: GAAAGGACATAGTTAAACTTCAGCATGGAGAATATTTATCTCTAGGAAAGgtatgcatga ... tcctctacagGTTGAGGCTGCTCTCATCGTGAGCCCCTATGTCGACAATATTATGTTGCAT
EST: AAACTTCAGCATGGAGAATATTTATCTCTAGGAAAG GTTGAGGCTGCTCTCATCGTGAGCCCCTATGTCGACAATATTATGTTGCATEST: gi|110364169|gb|EC923466.1|EC923466
genomic: AAACTTCAGCATGGAGAATATTTATCTCTAGGAAAGgtatgcatga ... tcctctacagGTTGAGGCTGCTCTCATCGTGAGCCCCTATGTCGACAATATTATGTTGCAT
EST: AAAGGACATAGTTAAACTTCAGCATGGAGAATATTTATCTCTAGGAAAG GTTGAGGCTGCTCTCATCGTGAGCCCCTATGTCGACAATATTATGTTGCATEST: gi|161716236|gb|FC065864.1|FC065864
genomic: AAAGGACATAGTTAAACTTCAGCATGGAGAATATTTATCTCTAGGAAAGgtatgcatga ... tcctctacagGTTGAGGCTGCTCTCATCGTGAGCCCCTATGTCGACAATATTATGTTGCAT
EST: GAAAGGACATAGTTAAACTTCAGCATGGAGAATATTTATCTCTAGGAAAG GTTGAGGCTGCTCTCATCGTGAGCCCCTATGTCGACAATATTATGTTGCAT
genomic: GAAAGGACATAGTTAAACTTCAGCATGGAGAATATTTATCTCTAGGAAAGgtatgcatga ... tcctctacagGTTGAGGCTGCTCTCATCGTGAGCCCCTATGTCGACAATATTATGTTGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACATAGGGCAGTTTCATGCTGATGGTTGCCTTGAAATAATTGACCGTAGAAAGGACATAGTTAAACTTCAGCATGGAGAATATTTATCTCTAGGAAAGgtatgcatgatgtaaaataatgtttttcgtttttctttccttttcttctcctttgatttttattttattattattacctttttattttttaaactaataccttcctctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA