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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAATTTGAACCAGAACTCCGAGATGGATTTATTGAAGCCTGTCTCCATCTTGTAAACCGTGATTATGATGCATTGGCTAAGGACTTCGTCACTCTTGGgtataataattatcttccccttaaattgctgaagagataattctcattgatgaggatatttataaggctggtttgccgataaactctgcag

Basic information

species Vitis vinifera
transcript Vv18s0001g01620.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g01620.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os04g54790.1 (Oryza sativa), 5'ss of exon 11
GTGAATTTGAACCAGAACTCCGAGATGGATTTATTGAAGCCTGTCTCCATCTTGTAAACCGTGATTATGATGCATTGGCTAAGGACTTCGTCACTCTTGGgtat-aataattatcttccccttaaattgctgaagagataattctcattgatgaggatatttataaggctggtttgccgataaactctgcag
| |||||   || |||||| || ||||||||||||||||||||||| || ||||| |||||||||| |||||  || || || || || || ||||| |||||  |||||  |    |  |   | |||  |  | |         ||   ||    |||    |   |||   |  |  |||  |||||||
GAGAATTCCGACAAGAACTTCGTGATGGATTTATTGAAGCCTGTCTTCACCTTGTTAACCGTGATTTTGATGGTTTAGCAAAAGATTTTGTTACTCTCGGgtaagaataagcactaacatcc--agttggcgctggg--------tatctgtg----tatccccatatctgacctatctttaatttctgcag

upper sequence: Vv18s0001g01620.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G305007_T01 (Zea mays), 5'ss of exon 11
GTGAATTTGAACCAGAACTCCGAGATGGATTTATTGAAGCCTGTCTCCATCTTGTAAACCGTGATTATGATGCATTGGCTAAGGACTTCGTCACTCTTGGgtataataattatcttccccttaaattgctgaagagataattctcattgatgaggatattt--ataaggctggtttgccgataaa--ctctgcag----------------------------------------------------------
| |||||   || |||||| || ||||||||||||||||| ||||| |||||||| |||||||||| |||||| || || || ||||| || || ||||||||  | ||||||||      |  | |  ||  ||   | || |||   || ||| |  ||   ||    |   |      | |    |||| ||                                                          
GAGAATTCCGACAAGAACTTCGTGATGGATTTATTGAAGCTTGTCTTCATCTTGTTAACCGTGATTTTGATGCTTTAGCAAAAGACTTTGTAACCCTTGGgtaagaaaattatctgaagtctgcactaatgt-gaatcagttttcacacattaggttggttcagtatcattatgtgatatgttaggtttctgaagtggaattcgtttttactaatgatccagcaaatgcaacttatctttacaaatcttgcag

upper sequence: Vv18s0001g01620.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA16G27500.1 (Glycine max), 5'ss of exon 11
GTGAATTTGAACCAGAACTCCGAGATGGATTTATTGAAGCCTGTCTCCATCTTGTAAACCGTGATTATGATGCATTGGCTAAGGACTTCGTCACTCTTGGgtata-ataattatct----tccccttaaattgctgaagagataattctcattgatgaggatatttataaggctggtttgccgataaactctg-cag
|||| ||  ||| |||| | || || ||||| || ||||| ||||| ||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||  |||  ||| |    |||| |  | ||  | ||| ||| |||||||||||           |||||       |||   |||| | |  |||
GTGAGTTCAAACAAGAATTACGCGACGGATTCATCGAAGCTTGTCTACATCTTGTAAACCGTGATTTTGATGCATTGGCCAAGGACTTTGTCACTCTTGGgtatttatatctatttatggtcccttacagttattaaagtgattattctcattgaa----------ataagatatcactgcttgtaaattttatcag