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ATATTACGCATCCAACTCCAGATCTTACTGGTTATATTACTGAGGGCCAGATATACATTGATAGGCAACTCCACAACCGGCAGgtgagttgaaaccaaactctttcttcatgttaaaatacatatttgtcatctctcatggcatatgcacttttctcctgactacgtggagtttgctagtttt...
species | Vitis vinifera |
transcript | Vv18s0001g01020.t01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: ATATTACTGAGGGCCAGATATACATTGATAGGCAACTCCACAACCGGCAG ATATACCCACCTATTAATGTTCTTCCATCACTCTCTCGACTAATGAAGEST: gi|37184152|gb|CF603506.1|CF603506
genomic: ATATTACTGAGGGCCAGATATACATTGATAGGCAACTCCACAACCGGCAGgtgagttgaa ... tgtggaacagATATACCCACCTATTAATGTTCTTCCATCACTCTCTCGACTAATGAAG
EST: ATATTACTGAGGGCCAGATATACATTGATAGGCAACTCCACAACCGGCAG ATATACCCACCTATTAATGTTCTTCCATCACTCTCTCGACTAATGAAGEST: gi|30128132|gb|CB913471.1|CB913471
genomic: ATATTACTGAGGGCCAGATATACATTGATAGGCAACTCCACAACCGGCAGgtgagttgaa ... tgtggaacagATATACCCACCTATTAATGTTCTTCCATCACTCTCTCGACTAATGAAG
EST: ATATTACTGAGGGCCAGATATACATTGATAGGCAACTCCACAACCGGCAG ATATACCCACCTATTAATGTTCTTCCATCACTCTCTCGACTAATGAAGEST: gi|110421897|gb|EC988201.1|EC988201
genomic: ATATTACTGAGGGCCAGATATACATTGATAGGCAACTCCACAACCGGCAGgtgagttgaa ... tgtggaacagATATACCCACCTATTAATGTTCTTCCATCACTCTCTCGACTAATGAAG
EST: ATATTACTGAGGGCCAGATATACATTGATAGGCAACTCCACAACCGGCAG ATATACCCACCTATTAATGTTCTTCCATCACTCTCTCGACTAATGAAG
genomic: ATATTACTGAGGGCCAGATATACATTGATAGGCAACTCCACAACCGGCAGgtgagttgaa ... tgtggaacagATATACCCACCTATTAATGTTCTTCCATCACTCTCTCGACTAATGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATTACGCATCCAACTCCAGATCTTACTGGTTATATTACTGAGGGCCAGATATACATTGATAGGCAACTCCACAACCGGCAGgtgagttgaaaccaaactctttcttcatgttaaaatacatatttgtcatctctcatggcatatgcacttttctcctgactacgtggagtttgctagtttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataca