1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AGACAATGCAGGGCTGGATAGTGCTGAGTTGATAGCACAGCTCCGTGCAGAGCACCACAAGGAAGAAAGCCACGCAGGGATTGATGTCATCTCTGGTTCGgtaagtaatggaattgagaaataaaaaatatagggtgcctgtctggtataaggttggatttgttatagtttctttgaggaaaaaacatgcattattcttc...
species | Vitis vinifera |
transcript | Vv18s0001g00480.t01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AGCACCACAAGGAAGAAAGCCACGCAGGGATTGATGTCATCTCTGGTTCG GTAGGAGATATGGCAGAACTGGGGATTTCTGAAGCATTCAAAGTTAAGCAGEST: gi|33404923|gb|CF210550.1|CF210550
genomic: AGCACCACAAGGAAGAAAGCCACGCAGGGATTGATGTCATCTCTGGTTCGgtaagtaatg ... gtgatggcagGTAGGAGATATGGCAGAACTGGGGATTTCTGAAGCATTCAAAGTTAAGCAG
EST: AGCACCACAAGGAAGAAAGCCACGCAGGGATTGATGTCATCTCTGGTTCG GTAGGAGATATGGCAGAACTGGGGATTTCTGAAGCATTCAAAGTTAAGCAGEST: gi|110361054|gb|EC924506.1|EC924506
genomic: AGCACCACAAGGAAGAAAGCCACGCAGGGATTGATGTCATCTCTGGTTCGgtaagtaatg ... gtgatggcagGTAGGAGATATGGCAGAACTGGGGATTTCTGAAGCATTCAAAGTTAAGCAG
EST: AGCACCACAAGGAAGTAAGCCACGCAGGGATTGATGTCATCTCTGGTTCG GTAGGAGATATGGCAGAACTGGGGATTTCTGAAGCATTCAAAGTTAAGCAGEST: gi|34544937|gb|CF513169.1|CF513169
genomic: AGCACCACAAGGAAGAAAGCCACGCAGGGATTGATGTCATCTCTGGTTCGgtaagtaatg ... gtgatggcagGTAGGAGATATGGCAGAACTGGGGATTTCTGAAGCATTCAAAGTTAAGCAG
EST: AGCACCCCAAGGAAGAAAGCCACGCAGGGATTGATGTCATCTCTGGTTCG GTAGGAGATATGGCAGAACTGGGGATTTTTGAAGCATTCAAAGTTAAGCAGEST: gi|351026682|gb|FQ436335.1|FQ436335
genomic: AGCACCACAAGGAAGAAAGCCACGCAGGGATTGATGTCATCTCTGGTTCGgtaagtaatg ... gtgatggcagGTAGGAGATATGGCAGAACTGGGGATTTCTGAAGCATTCAAAGTTAAGCAG
EST: AGCACCACAAGGAAGTAAGCCACGCAGGGATTGATGTCATCTCTGGTTCG GTAGGAGATATGGCAGAACTGGGGATTTCTGAAGCATTCAAAGTTAAGCAGEST: gi|110694929|gb|EE072362.1|EE072362
genomic: AGCACCACAAGGAAGAAAGCCACGCAGGGATTGATGTCATCTCTGGTTCGgtaagtaatg ... gtgatggcagGTAGGAGATATGGCAGAACTGGGGATTTCTGAAGCATTCAAAGTTAAGCAG
EST: AGCACCACAAGGAAGAAAGCCACGCAGGGATTGATGTCATCTCTGGTTCG GTAGGAGATATGGCAGAACTGGGGATTTCTGAAGCATTCAAAGTTAAGCAGEST: gi|352773729|gb|FQ472511.1|FQ472511
genomic: AGCACCACAAGGAAGAAAGCCACGCAGGGATTGATGTCATCTCTGGTTCGgtaagtaatg ... gtgatggcagGTAGGAGATATGGCAGAACTGGGGATTTCTGAAGCATTCAAAGTTAAGCAG
EST: AGCACCACAAGGAAGAAAGCCACGCAGGGATTGATGTCATCTCTGGTTCG GTAGGAGATATGGCAGAACTGGGGATTTCTGAAGCATTCAAAGTTAAGCAGEST: gi|110728449|gb|EE104025.1|EE104025
genomic: AGCACCACAAGGAAGAAAGCCACGCAGGGATTGATGTCATCTCTGGTTCGgtaagtaatg ... gtgatggcagGTAGGAGATATGGCAGAACTGGGGATTTCTGAAGCATTCAAAGTTAAGCAG
EST: AGCACCACAAGGAAGAAAGCCACGCAGGGATTGATGTCATCTCTGGTTCG GTAGGAGATATGGCAGAACTGGGGGATTTCTGAAGCATTCAAAGTTAAGCCEST: gi|110688180|gb|EE066436.1|EE066436
genomic: AGCACCACAAGGAAGAAAGCCACGCAGGGATTGATGTCATCTCTGGTTCGgtaagtaatg ... gtgatggcagGTAGGAGATATGGCAGAACTGGGG-ATTTCTGAAGCATTCAAAGTTAAGCA
EST: CGCAGGGATTGATGTCATCTCTGGTTCG GTAGGAGATATGGCAGAACTGGGGATTTCTGAAGCATTCAAAGTTAAGCAGEST: gi|110387828|gb|EC952526.1|EC952526
genomic: CGCAGGGATTGATGTCATCTCTGGTTCGgtaagtaatg ... gtgatggcagGTAGGAGATATGGCAGAACTGGGGATTTCTGAAGCATTCAAAGTTAAGCAG
EST: AGCACCACAAGGAAGAAAGCCACGCAGGGATTGATGTCATCTCTGGTTCG GTAGGAGATATGGCAGAACTGGGGATTTCTGAAGCATTCAAAGTTAAGCAGEST: gi|351017182|gb|FQ424611.1|FQ424611
genomic: AGCACCACAAGGAAGAAAGCCACGCAGGGATTGATGTCATCTCTGGTTCGgtaagtaatg ... gtgatggcagGTAGGAGATATGGCAGAACTGGGGATTTCTGAAGCATTCAAAGTTAAGCAG
EST: AGCACCACAAGGAAGTAAGCCACGCAGGGATTGATGTCATCTCTGGTTCG GTAGGAGATATGGCAGAACTGGGGATTTCTGAAGCATTCAAAGTTAAGCAGEST: gi|34543743|gb|CF511975.1|CF511975
genomic: AGCACCACAAGGAAGAAAGCCACGCAGGGATTGATGTCATCTCTGGTTCGgtaagtaatg ... gtgatggcagGTAGGAGATATGGCAGAACTGGGGATTTCTGAAGCATTCAAAGTTAAGCAG
EST: AGCACCACAAGGAAGAAAGCCACGCAGGGATTGATGTCATCTCTGGTTCG GTAGGAGATATGGCAGAACTGGGGATTTCTGAAGCATTCAAAGTTAAGCAGEST: gi|351015108|gb|FQ444397.1|FQ444397
genomic: AGCACCACAAGGAAGAAAGCCACGCAGGGATTGATGTCATCTCTGGTTCGgtaagtaatg ... gtgatggcagGTAGGAGATATGGCAGAACTGGGGATTTCTGAAGCATTCAAAGTTAAGCAG
EST: AGCACCACAAGGAAGTAAGCCACGCAGGGATTGATGTCATCTCTGGTTCG GTAGGAGATATGGCAGAACTGGGGATTTCTGAAGCATTCAAAGTTAAGCAG
genomic: AGCACCACAAGGAAGAAAGCCACGCAGGGATTGATGTCATCTCTGGTTCGgtaagtaatg ... gtgatggcagGTAGGAGATATGGCAGAACTGGGGATTTCTGAAGCATTCAAAGTTAAGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGACAATGCAGGGCTGGATAGTGCTGAGTTGATAGCACAGCTCCGTGCAGAGCACCACAAGGAAGAAAGCCACGCAGGGATTGATGTCATCTCTGGTTCGgtaagtaatggaattgagaaataaaaaatatagggtgcctgtctggtataaggttggatttgttatagtttctttgaggaaaaaacatgcattattcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatggaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaaa