1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ACATGCAGAGAAGTATGTACGAAGGGGTAGATTGGACTGGCCAGAAGGTGCGACTTCAAGGGAAAGTATCAAAGCTGTTCTCAAGCTACCTCGCCTTCAGgtttgtgtacattgattgatttggttcattcataccaagttttgtgagcttgtctaaaggttctttatttgtattttggtcatgtgtttgacaaatctatatatgcaccttttttggcag
species | Vitis vinifera |
transcript | Vv17s0000g09500.t01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CGACTTCAAGGGAAAGTATCAAAGCTGTTCTCAAGCTACCTCGCCTTCAG AACCTAATAATGCAGCATGTGGACCATTCGGCTGGAGATCTAATACATCTGEST: gi|110373955|gb|EC938383.1|EC938383
genomic: CGACTTCAAGGGAAAGTATCAAAGCTGTTCTCAAGCTACCTCGCCTTCAGgtttgtgtac ... tttttggcagAACCTAATAATGCAGCATGTGGACCATTCGGCTGGAGATCTAATACATCTG
EST: CAACTTCAAGGGAAAGTATCAAAGCTGTTCTCAAGCTACCTCGCCTTCAG AACCTAATAATGCAGCATGTGGACCATTCGGCTGGAGATCTAATACATCTGEST: gi|110362754|gb|EC926306.1|EC926306
genomic: CGACTTCAAGGGAAAGTATCAAAGCTGTTCTCAAGCTACCTCGCCTTCAGgtttgtgtac ... tttttggcagAACCTAATAATGCAGCATGTGGACCATTCGGCTGGAGATCTAATACATCTG
EST: CAACTTCAAGGGAAAGTATCAAAGCTGTTCTCAAGCTACCTCGCCTTCAG AACCTAATAATGCAGCATGTGGACCATTCGGCTGGAGATCTAATACATCTGEST: gi|71889805|gb|DT038860.1|DT038860
genomic: CGACTTCAAGGGAAAGTATCAAAGCTGTTCTCAAGCTACCTCGCCTTCAGgtttgtgtac ... tttttggcagAACCTAATAATGCAGCATGTGGACCATTCGGCTGGAGATCTAATACATCTG
EST: CAACTTCAAGGGAAAGTATCAAAGCTGTTCTCAAGCTACCTCGCCTTCAG AACCTAATAATGCAGCATGTGGACCATTCGGCTGGAGATCTAATACATCTGEST: gi|161709978|gb|FC059766.1|FC059766
genomic: CGACTTCAAGGGAAAGTATCAAAGCTGTTCTCAAGCTACCTCGCCTTCAGgtttgtgtac ... tttttggcagAACCTAATAATGCAGCATGTGGACCATTCGGCTGGAGATCTAATACATCTG
EST: CGACTTCAAGGGAAAGTATCAAAGCTGTTCTCAAGCTACCTCGCCTTCAG AACCTAATAATGCAGCATGTGGACCATTCGGCTGGAGATCTAATACATCTGEST: gi|30255726|gb|CB971858.1|CB971858
genomic: CGACTTCAAGGGAAAGTATCAAAGCTGTTCTCAAGCTACCTCGCCTTCAGgtttgtgtac ... tttttggcagAACCTAATAATGCAGCATGTGGACCATTCGGCTGGAGATCTAATACATCTG
EST: CGACTTCAAGGGAAAGTATCAAAGCTGTTCTCAAGCTACCTCGCCTTCAG AACCTAATAATGCAGCATGTGGACCATTCGGCTGGAGATCTAATACATCTG
genomic: CGACTTCAAGGGAAAGTATCAAAGCTGTTCTCAAGCTACCTCGCCTTCAGgtttgtgtac ... tttttggcagAACCTAATAATGCAGCATGTGGACCATTCGGCTGGAGATCTAATACATCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACATGCAGAGAAGTATGTACGAAGGGGTAGATTGGACTGGCCAGAAGGTGCGACTTCAAGGGAAAGTATCAAAGCTGTTCTCAAGCTACCTCGCCTTCAGgtttgtgtacattgattgatttggttcattcataccaagttttgtgagcttgtctaaaggttctttatttgtattttggtcatgtgtttgacaaatctatatatgcaccttttttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT