Sequence
atgc intronic sequence ATGC exonic sequenceGTATGTTTTTGGACTTGTACATGTGCCTCGCTTGGAAGACTGGCCTGTTATGCCAGTGGAACGCATCGGTTTTATGCTTCAGgtattagcgtagttaatttatttgcaatctttgccagaacagtacttaagactctcatgctgttgggttgcatgtggttgaatatgttttctttcccttc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g09100.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os04g40040.1 (Oryza sativa), 5'ss of exon 12
GTATGTTTTTGGACTTGTACATGTGCCTCGCTTGGAAGACTGGCCTGTTATGCCAGTGGAACGCATCGGTTTTATGCTTCAGgtattagcgtagttaatttatttgca---atctttgccagaacagtacttaagactctcatgctgttgggttgcatg--tggttgaatatgttttctttcccttc--------------------------------------------
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GTATGTGTTTGGGCTCACCCATATCCCAAGGCTGGAGGACTGGCCTGTCATGCCAGTGGAACGCATCGGCTTCATGCTCATGgtaaagacctttttttttttttagaacaaagaccttctcttgtagcctttcatatctcctctttggcagacgacttctctagtttccaccgttctggtttttacagtatcagctcaaagcctgtttgtgtcttgtttaattcttttcag
upper sequence: Vv17s0000g09100.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os04g04950.1 (Oryza sativa), 5'ss of exon 11
GTATGTTTTTGGACTTGTACATGTGCCTCGCTTGGAAGACTGGCCTGTTATGCCAGTGGAACGCATCGGTTTTATGCTTCAGgtattagcgtagttaatttatttgcaatctttgccagaacagtacttaagactctcatgctgttgggttgcatgtggttgaatatgttttctttcccttc
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GTACGTTTTCGGGGTTACCCATGTCCCAAGGCTCGAAGACTGGCCTGTAATGCCAGTGGAACACATCGGCTTCATGCTGAAGgtacaagttcagcctaattggtttcttttctgctttattcactgcat--gatttcgattagcttctgtttcgaatag-----------------------
upper sequence: Vv17s0000g09100.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA17G09290.1 (Glycine max), 5'ss of exon 11
GTATGTTTTTGGACTTGTACATGTGCCTCGCTTGGAAGACTGGCCTGTTATGCCAGTGGAACGCATCGGTTTTATGCTTCAGgtattagcgta---gttaatttatttgcaatctttgccagaacagtacttaagactctcatg--ctgttgggttgcatgtggttgaatatgttttctttcccttc
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GTATGTATTTGGAATCACACAGGTTCCTCGTTTGGAAGACTGGCCAGTTATGCCAGTAGAACGCATCGGTTTTATGCTCATGgtaattgccttgatgttgattgttttcattttttttcctgagcattctttgaattaattatagtctgttctttttcctatatatcatttaatttgaagct-----
upper sequence: Vv17s0000g09100.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA06G18810.1 (Glycine max), 5'ss of exon 11
GTATGTTTTTGGACTTGTACATGTGCCTCGCTTGGAAGACTGGCCTGTTATGCCAGTGGAACGCATCGGTTTTATGCTTCAGgtattagcgtagttaatttatttgcaatctttgccagaacagtacttaagactctcatgctgttgggttgc---atgtggttgaatatgttttctttcccttc
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GTATATATTTGGAATCACACACGTTCCTCGTTTGGAAGACTGGCCTGTTATGCCAGTAGAGCGCATTGGTTTTATGCTCACGgtaattattt-gttgatttcttcgtcgatttttcttgagtagtttgctgtttgcctatcattttaggttactttatatggtggtttgtttctcatgtcttt--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110384772|gb|EC949232.1|EC949232EST: TGGAAGACTGGCCTGTTATGCCAGTGGAACGCATCGGTTTTATGCTTCAG CCACATGGGTTCTTCAACTGCTCACTTGCGGTGGACGTCCCCCCGAACGCT
genomic: TGGAAGACTGGCCTGTTATGCCAGTGGAACGCATCGGTTTTATGCTTCAGgtattagcgt ... gtgggtgcagCCACATGGGTTCTTCAACTGCTCACCTGCGGTGGACGTCCCCCCGAACGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTATGTTTTTGGACTTGTACATGTGCCTCGCTTGGAAGACTGGCCTGTTATGCCAGTGGAACGCATCGGTTTTATGCTTCAGgtattagcgtagttaatttatttgcaatctttgccagaacagtacttaagactctcatgctgttgggttgcatgtggttgaatatgttttctttcccttc
- - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttccc