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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAAAGGAATTCCGTGGCCATTCATCTTATGTGAATGATGCTATATTTACAAATGACGGAGGTCGTGTTGTTACTGCCTCCAGTGATTGCACAGTAAAGgtaaatttatcttgtcctgggatgtgaagacaacagactaggttaggctatttcattctcctgtgcccataacaggttgcatatgccttattatag

Basic information

species Vitis vinifera
transcript Vv17s0000g08930.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g08930.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA08G13560.2 (Glycine max), 5'ss of exon 11
GTTAAAGGAATTCCGTGGCCATTCATCTTATGTGAATGATGCTATATTTACAAATGACGGAGGTCGTGTTGTTACTGCCTCCAGTGATTGCACAGTAAAGgtaaatttatcttgtcctgggatgtgaagacaacagactaggttaggctatttcattctcctgtgcccataacaggttgcatatgccttattatag
||| || || |||||||||||| ||||||||||||||||||| || ||||||||||| ||  |||||||| |||||||||| ||||| || ||| | |||||   ||   |||| | | | |  |||||              | |  ||| |  |  || |  |      |    ||   |   ||||||| |||
GTTGAAAGAGTTCCGTGGCCATACATCTTATGTGAATGATGCAATTTTTACAAATGATGGGAGTCGTGTTATTACTGCCTCAAGTGACTGTACAATCAAGgtctgtta--cttggcattgtacttgaagttc----------cttgtttatctggtgttcataaga----gatgtattttctcctccttattgtag

upper sequence: Vv17s0000g08930.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA05G30430.2 (Glycine max), 5'ss of exon 11
GTTAAAGGAATTCCGTGGCCATTCATCTTATGTGAATGATGCTATATTTACAAATGACGGAGGTCGTGTTGTTACTGCCTCCAGTGATTGCACAGTAAAGgtaaatttatcttgtcctgggatgtgaagacaacagactaggttaggctatttcattctcctgtgcccataacaggttgcatatgcct---tattatag
||| || || |||||||||||| ||||||||||||||||||| || ||||||||||| ||  |||||||| |||||||||| ||||| || ||| | |||||   ||   |||| | | | |  |||||                   |  ||  |  ||  |||  ||||  || |  | | | |||   |||| |||
GTTGAAAGAGTTCCGTGGCCATACATCTTATGTGAATGATGCAATTTTTACAAATGATGGGAGTCGTGTTATTACTGCCTCAAGTGACTGTACAATCAAGgtctgtta--cttggcattgtacttgaag------------------ttccttgttcatctggtgttcatatgagatgtctttttcctccgtattgtag

upper sequence: Vv17s0000g08930.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT1G73720.1 (Arabidopsis thaliana), 5'ss of exon 11
GTTAAAGGAATTCCGTGGCCATTCATCTTATGTGAATGATGCTATATTTACAAATGACGGAGGTCGTGTTGTTACTGCCTCCAGTGATTGCACAGTAAAGgtaaatttatcttgtcctgggatgtgaagacaacaga-----ctaggttaggctatttcattctcctgtgcccataacaggttgcatatgccttattatag
||| || ||||| ||||| ||  |||||||||| ||| |||| || ||||||| ||| ||| | ||| || | ||||||||||||||||| ||||||||||||||||  ||  | | | || ||| |  |  |         ||   || | || | |    || |||  |   ||| |     | | |  | |   | ||
GTTGAAAGAATTTCGTGGTCACACATCTTATGTAAATCATGCCATCTTTACAAGTGATGGAAGCCGTATTATCACTGCCTCCAGTGATTGTACAGTAAAGgtaaattcttc--ggctttggctgtcagcagtatcattgtttctcatttggactctctgccccttctgc-cgtgtaataacagtcttgtttccttgcacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351014184|gb|FQ434773.1|FQ434773
EST:     CAAATGACGGAGGTCGTGTTGTTACTGCCTCCAGTGATTGCACAGTAAAG                         GTCTGGGATGTGAAGACAACCGACTGTTTGCAGACATTTAAGCCACCACCT
genomic: CAAATGACGGAGGTCGTGTTGTTACTGCCTCCAGTGATTGCACAGTAAAGgtaaatttat ... cttattatagGTCTGGGATGTGAAGACAACCGACTGTTTGCAGACATTTAAGCCACCACCT
EST: gi|33403518|gb|CF209145.1|CF209145
EST:     CAAATGACGGAGGTCGTGTTGTTACTGCCTCCAGTGATTGCACAGTAAAG                         GTCTGGGATGTGAAGACAACCGACTGTTTGCAGACATTTAAGCCACCACCT
genomic: CAAATGACGGAGGTCGTGTTGTTACTGCCTCCAGTGATTGCACAGTAAAGgtaaatttat ... cttattatagGTCTGGGATGTGAAGACAACCGACTGTTTGCAGACATTTAAGCCACCACCT
EST: gi|110430180|gb|EC996718.1|EC996718
EST:     CAAATGACGGAGGTCGTGTTGTTACTGCCTCCAGTGATTGCACAGTAAAG                         GTCTGGGATGTGAAGACAACCGACTGTTTGCAGACATTTAAGCCACCACCT
genomic: CAAATGACGGAGGTCGTGTTGTTACTGCCTCCAGTGATTGCACAGTAAAGgtaaatttat ... cttattatagGTCTGGGATGTGAAGACAACCGACTGTTTGCAGACATTTAAGCCACCACCT
EST: gi|110686642|gb|EE064514.1|EE064514
EST:     CAAATGACGGAGGTCGTGTTGTTACTGCCTCCAGTGATTGCACAGTAAAG                         GTCTGGGATGTGAAGACAACCGACTGTTTGCAGACATTTAAGCCACCACCT
genomic: CAAATGACGGAGGTCGTGTTGTTACTGCCTCCAGTGATTGCACAGTAAAGgtaaatttat ... cttattatagGTCTGGGATGTGAAGACAACCGACTGTTTGCAGACATTTAAGCCACCACCT
EST: gi|110387409|gb|EC952071.1|EC952071
EST:     CAAATGACGGAGGTCGTGTTGTTACTGCCTCCAGTGATTGCACAGTAAAG                         GTCTGGGATGTGAAGACAACCGACTGTTTGCAGACATTTAAGCCACCACCT
genomic: CAAATGACGGAGGTCGTGTTGTTACTGCCTCCAGTGATTGCACAGTAAAGgtaaatttat ... cttattatagGTCTGGGATGTGAAGACAACCGACTGTTTGCAGACATTTAAGCCACCACCT
EST: gi|110687493|gb|EE064965.1|EE064965
EST:     CAAATGACGGAGGTCGTGTTGTTACTGCCTCCAGTGATTGCACAGTAAAG                         GTCTGGGATGTGAAGACAACCGACTGTTTGCAGACATTTAAGCCACCACCT
genomic: CAAATGACGGAGGTCGTGTTGTTACTGCCTCCAGTGATTGCACAGTAAAGgtaaatttat ... cttattatagGTCTGGGATGTGAAGACAACCGACTGTTTGCAGACATTTAAGCCACCACCT