Sequence
atgc intronic sequence ATGC exonic sequenceATGGAGATGGAAATTGAAGAGCTAAGGCGCCAAAGAGATCTTGCACAATCCCAGGTGGACGAATTAAGGAAAAAAATTCAGGACGACCCACAGgtctctctcctctcattctcttcataatgtataaacatctatcttgtctctctttcttgtaatttatttccaactcacctttatctttgcctgtttccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g03290.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA07G10790.1 (Glycine max), 5'ss of exon 11
ATGGAGATGGAAATTGAAGAGCTAAGGCGCCAAAGAGATCTTGCACAATCCCAGGTGGACGAATTAAGGAAAAAAATTCAGGACGACCCACAGgtctctctc-ctctcattctct-tcataatgtataaacatctatcttgtctctctttcttgtaatttatttccaactcacctttatctttgcctgtttccag
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ATGGAAATGGAAATTGAAGAGCTGAGACGCCAGAGAGATCTTGCACAAACTCAGGTGGATGAATTACGCAGAAAGCTTCAGGATGACCAGAAGgtttctttttctctctctctccctttctctctgtcatgattcatttcaactgacttttaagaacttt--ttgcacttcag----------------------
upper sequence: Vv17s0000g03290.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA09G31270.1 (Glycine max), 5'ss of exon 11
ATGGAGATGGAAATTGAAGAGCTAAGGCGCCAAAGAGATCTTGCACAATCCCAGGTGGACGAATTAAGGAAAAAAATTCAGGACGACCCACAGgtctctct-cctctcattctcttcataatgtataaacatctatcttgtctctctttcttgtaatttatttccaactcacctttatctttgcctgtttccag
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ATGGAAATGGAAATTGAAGAGCTGAGACGCCAGAGAGATCTTGCACAAACTCAGGCGGATGAATTACGCAGAAAGCTTCAGGATGACCAGAAGgtttcttttcctctctctctatctctctcccccttacctcccactt---tctcttggtcatgattcatttc-aactgataaagatccttttgcacttcag-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37187482|gb|CF606835.1|CF606835EST: CACAATCCCAGGTGGACGAATTAAGGNNNNNNNTTCAGGACGACCCACAG CCTCAGAGTTCAAATCCATTTGACTCACCTCGTCCAGTGAAGAAGTGTCTC
genomic: CACAATCCCAGGTGGACGAATTAAGGAAAAAAATTCAGGACGACCCACAGgtctctctcc ... ctgtttccagCCTCAGAGTTCAAATCCATTTGACTCACCTCGTCCAGTGAAGAAGTGTCTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGGAGATGGAAATTGAAGAGCTAAGGCGCCAAAGAGATCTTGCACAATCCCAGGTGGACGAATTAAGGAAAAAAATTCAGGACGACCCACAGgtctctctcctctcattctcttcataatgtataaacatctatcttgtctctctttcttgtaatttatttccaactcacctttatctttgcctgtttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA