Sequence
atgc intronic sequence ATGC exonic sequenceTCTACAAGCTGAGACGAAACATTGAAATGGATGAGTATGACCTAATCCATTGGCGCCGATCTTTTGAAGAAAGAGAAGCACTGATCAGAGACATCAGTTGgtaattcctaacctctacatatcttttgttcatatttacttcttttttgcatattagagacatctcctaaggtgtctgacaatattactgacctcacttg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g01850.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os01g67570.1 (Oryza sativa), 5'ss of exon 11
TCTACAAGCTGAGACGAAACATTGAAATGGATGAGTATGACCTAATCCATTGGCGCCGATCTTTTGAAGAAAGAGAAGCACTGATCAGAGACATCAGTTGgtaattcctaacctctacatatcttttgttcatatttacttcttttttgcatattagagacatctcctaaggtgtctgacaatattactgacctcacttg
| ||||| ||||||||| |||||||||||||| || ||||| || |||||||| ||||| ||||| | ||||| || ||||||||||| | |||||||| | ||| | || | | || |||| | | ||| | ||| || || | |
TAGGGAAGCTCCGACGAAACAAAGAAATGGATGAGTACGATCTAATGCAATGGCGCCGTTCTTTCGAAGAGCGGGAAGCTCTTATCAGAGACATATGCTGgtaattgc-aactaatgt-tactactgctacaaatttgatgccaccgaatgtatatccactaactcaaaaattggcag----------------------
upper sequence: Vv17s0000g01850.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G091419_T01 (Zea mays), 5'ss of exon 11
TCTACAAGCTGAGACGAAACATTGAAATGGATGAGTATGACCTAATCCATTGGCGCCGATCTTTTGAAGAAAGAGAAGCACTGATCAGAGACATCAGTTGgtaattcctaacctctacatatcttttgttcatatttacttcttttttgcatattagagacatctcctaaggtgtctgacaatattactgacctcacttg
| ||||| ||||||||| ||||||||||||||||| || || || ||||| || || |||||||| || ||||| || |||||||||||| | |||||| || | || || || | | | |||| | | || || || ||| || | | ||||
TTAGGAAGCTCCGACGAAACAAAGAAATGGATGAGTATGATCTGATGCAATGGCGTCGTTCATTTGAAGAGAGGGAAGCGCTTATCAGAGACATCTGCTGgtaaatcttg-tatcaacgaattctgtcacaccacctactgcgtagtttggtaac-----tccctaataaagtttttttttttatttgcag---------
upper sequence: Vv17s0000g01850.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA06G18080.1 (Glycine max), 5'ss of exon 11
TCTACAAGCTGAGACGAAACATTGAAATGGATGAGTATGACCTAATCCATTGGCGCCGATCTTTTGAAGAAAGAGAAGCACTGATCAGAGACATCAGTTGgtaattcctaacctctacatatcttttgttcatatttacttcttttttgcatattagagacatctcctaaggtgtctgacaatattactgacctcacttg
| ||| ||||| || || |||| ||||||||||||||| || |||||||| |||| ||||| |||||||||||| ||| ||||||||||| ||||| | | | || || ||| | | | ||| || || | | |||| | ||| | | || | |
TTACCAAACTGAGGCGCAATGTTGAGATGGATGAGTATGACTACATGCATTGGCGTAGATCATTTGAGGAAAGAGAAGCATTGACTAGAGACATCAGCTGgtactattatgctaatgttaatattca--tcaacctaattccttgttatgatgcattaatttttacctattatttctctcccttttgcag----------
upper sequence: Vv17s0000g01850.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA04G36900.1 (Glycine max), 5'ss of exon 12
TCTACAAGCTGAGACGAAACATTGAAATGGATGAGTATGACCTAATCCATTGGCGCCGATCTTTTGAAGAAAGAGAAGCACTGATCAGAGACATCAGTTGgtaattcctaacctctacatatcttttgtt-catatttacttcttttttgc-atattagagacatctcctaaggtgtctgacaatattactgacctcacttg
| ||| ||||| || || |||| ||||||||||||||| || |||||||| |||| ||||| ||||||||| || |||| ||||||||||| ||||| ||| | | || | | | | | || ||| || || || | || |||| | | | | | || | |
TTACCAAACTGAGGCGCAATGTTGAGATGGATGAGTATGACTACATGCATTGGCGTAGATCATTTGAGGAAAGAGAAACATTGATTAGAGACATCAGCTGgta----ctattatgttaatgttaataatcataaacctaattccttgttatgatgcattaagtttcacctattatttatcccccttttccag----------
upper sequence: Vv17s0000g01850.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT3G48500.2 (Arabidopsis thaliana), 5'ss of exon 10
TCTACAAGCTGAGACGAAACATTGAAATGGATGAGTATGACCTAATCCATTGGCGCCGATCTTTTGAAGAAAGAGAAGCACTGATCAGAGACATCAGTTGgtaattcctaacctctacatatcttttgttcatatttacttcttttttgcatattagagacatctcctaaggtgtctgacaatattactgacctcacttg
| ||||||| |||||||| || || ||||| |||||||| | | || |||||||||||||| || |||||||||||| || ||||||| ||||| | |||| | || | || | | |||| | | | ||| || ||| | | | |
TTGACAAGCTCAGACGAAATATAGAGATGGACGAGTATGATTTCTTACACTGGCGCCGATCTTTGGAGGAAAGAGAAGCATTGCTCAGAGATATCAGCTCgtaagtaaaaaaaagttcac-tttgatgttttt-caaagaaagtgtttagatgaagaagatttattttgcag----------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122690212|gb|EC949530.1|EC949530EST: TGGCGCCGATCTTTTGAAGAAAGAGAAGCACTGATCAGAGACATCAGTTG TCGGCAGGCGCTTGGCCTCCCATTGGAGGAGCCAGGGAAGTTGGTAGATGC
genomic: TGGCGCCGATCTTTTGAAGAAAGAGAAGCACTGATCAGAGACATCAGTTGgtaattccta ... aatttgtcagTCGGCAGGCGCTTGGCCTCCCATTGGAGGAGCCAGGGAAGTTGGTAGATGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTACAAGCTGAGACGAAACATTGAAATGGATGAGTATGACCTAATCCATTGGCGCCGATCTTTTGAAGAAAGAGAAGCACTGATCAGAGACATCAGTTGgtaattcctaacctctacatatcttttgttcatatttacttcttttttgcatattagagacatctcctaaggtgtctgacaatattactgacctcacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agagaca