1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AAAACTATAAGGACCGAGTTTGCAGACTGCACTGTGATCACCGTGGCTCACAGAATACCAACTGTGATGGACTGCACAATGGTTCTTGCCATCAGCGACGgtgagttccagtcgtatatcttcaccctcccccattgttgtacttccatgccttcgtaccccattccttcatgtcgaagaaaaaaatctaaagaaaacaatattttcaatccattgcag
species | Vitis vinifera |
transcript | Vv16s0050g02480.t01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CAGAATACCAACTGTGATGGACTGCACAATGGTTCTTGCCATCAGTGACG GAAAACTAGTTGAGTATGATGAACCAGCAAAGCTAATGAAGAGGGAAGGCTEST: gi|110699494|gb|EE076542.1|EE076542
genomic: CAGAATACCAACTGTGATGGACTGCACAATGGTTCTTGCCATCAGCGACGgtgagttcca ... tccattgcagGAAAACTAGTTGAGTATGATGAACCAGCAAAGCTAATGAAGAGGGAAGGCT
EST: CAGAATACCAACTGTGATGGACTGCACAATGGTTCTTGCCATCAGTGACG GAAAACTAGTTGAGTATGATGAACC-GCAAAGCTAAEST: gi|110411972|gb|EC977703.1|EC977703
genomic: CAGAATACCAACTGTGATGGACTGCACAATGGTTCTTGCCATCAGCGACGgtgagttcca ... tccattgcagGAAAACTAGTTGAGTATGATGAACCAGCAAAGCTAA
EST: CAGAATACCAACTGTGATGGACTGCACAATGGTTCTTGCCATCAGCGACG GAAAACTAGTTGAGTATGATGAACCAGCAAAGCTAATGAAGAGGGAAGGCTEST: gi|110427992|gb|EC994450.1|EC994450
genomic: CAGAATACCAACTGTGATGGACTGCACAATGGTTCTTGCCATCAGCGACGgtgagttcca ... tccattgcagGAAAACTAGTTGAGTATGATGAACCAGCAAAGCTAATGAAGAGGGAAGGCT
EST: CAGAATACCAACTGTGATGGACTGCACAATGGTTCTTGCCATCAGTGACG GAAAACTAGTTGAGTATGATGAACCAGCAAAGCTAATGAAGAGGGAAGGCTEST: gi|30299486|gb|CB976280.1|CB976280
genomic: CAGAATACCAACTGTGATGGACTGCACAATGGTTCTTGCCATCAGCGACGgtgagttcca ... tccattgcagGAAAACTAGTTGAGTATGATGAACCAGCAAAGCTAATGAAGAGGGAAGGCT
EST: CAGAATACCAACTGTGATGGACTGCACAATGGTTCTTGCCATCAGTGACG GAAAACTAGTTGAGTATGATGAACCAGCAAAGCTAATGAAGAGGGAAGGCTEST: gi|34362924|gb|CF404509.1|CF404509
genomic: CAGAATACCAACTGTGATGGACTGCACAATGGTTCTTGCCATCAGCGACGgtgagttcca ... tccattgcagGAAAACTAGTTGAGTATGATGAACCAGCAAAGCTAATGAAGAGGGAAGGCT
EST: CAGAATACCAACTGTGATGGACTGCACAATGGTTCTTGCCATCAGTGACG GAAAACTAGTTGAGTATGATGAACCAGCAAAGCTAATGAAGAGGGAAGGCTEST: gi|30300431|gb|CB977225.1|CB977225
genomic: CAGAATACCAACTGTGATGGACTGCACAATGGTTCTTGCCATCAGCGACGgtgagttcca ... tccattgcagGAAAACTAGTTGAGTATGATGAACCAGCAAAGCTAATGAAGAGGGAAGGCT
EST: CAGAATACCAACTGTGATGGACTGCCCAATGGTTTTTGCCATCAGTGACG GAAAACTAGTTGAGTATGATGAACCAGCAAAGCTAATGAAGAGGGAAGGCTEST: gi|110695979|gb|EE074612.1|EE074612
genomic: CAGAATACCAACTGTGATGGACTGCACAATGGTTCTTGCCATCAGCGACGgtgagttcca ... tccattgcagGAAAACTAGTTGAGTATGATGAACCAGCAAAGCTAATGAAGAGGGAAGGCT
EST: CAGAATACCAACTGTGATGGACTGCACAATGGTTTTTGCCATCAGTGACG GAAAACTAGTTGAGTATGATGAACCAGCAAAGCTAATGAAGAGGGAAGGCTEST: gi|34542733|gb|CF510965.1|CF510965
genomic: CAGAATACCAACTGTGATGGACTGCACAATGGTTCTTGCCATCAGCGACGgtgagttcca ... tccattgcagGAAAACTAGTTGAGTATGATGAACCAGCAAAGCTAATGAAGAGGGAAGGCT
EST: CAGAATACCAACTGTGATGGACTGCACAATGGTTCTTGCCATCAGTGACG GAAAACTAGTTGAGTATGATGAACCAGCAAAGCTAATGAAGAGGGAAGGCTEST: gi|34549752|gb|CF517984.1|CF517984
genomic: CAGAATACCAACTGTGATGGACTGCACAATGGTTCTTGCCATCAGCGACGgtgagttcca ... tccattgcagGAAAACTAGTTGAGTATGATGAACCAGCAAAGCTAATGAAGAGGGAAGGCT
EST: CAGAATACCAACTGTGATGGACTGCACAATGGTTCTTGCCATCAGTGACG GAAAACTAGTTGAGTATGATGAACCAGCAAAGCTAATGAAGAGGGAAGGCTEST: gi|34542820|gb|CF511052.1|CF511052
genomic: CAGAATACCAACTGTGATGGACTGCACAATGGTTCTTGCCATCAGCGACGgtgagttcca ... tccattgcagGAAAACTAGTTGAGTATGATGAACCAGCAAAGCTAATGAAGAGGGAAGGCT
EST: CAGAATACCAACTGTGATGGACTGCACAATGGTTCTTGCCATCAGTGACG GAAAACTAGTTGAGTATGATGAACCAGCAAAGCTAATGAAGAGGGAAGGCT
genomic: CAGAATACCAACTGTGATGGACTGCACAATGGTTCTTGCCATCAGCGACGgtgagttcca ... tccattgcagGAAAACTAGTTGAGTATGATGAACCAGCAAAGCTAATGAAGAGGGAAGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAACTATAAGGACCGAGTTTGCAGACTGCACTGTGATCACCGTGGCTCACAGAATACCAACTGTGATGGACTGCACAATGGTTCTTGCCATCAGCGACGgtgagttccagtcgtatatcttcaccctcccccattgttgtacttccatgccttcgtaccccattccttcatgtcgaagaaaaaaatctaaagaaaacaatattttcaatccattgcag
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