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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGACTACTGACAAAAGCTGGTGAACGAGTCCTCGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAGGCGATTATCAGGCGGTTTGAGCACAGgtagatttgcatattgtgtcacactcggcatcattttcatcgttttaccgcatttaaactaaagccgtgttgtatggagaaggatatattgaagatagatgaatgtgtcaccatgcttcgagtaggcaaactaatggtatctgtgatgaacag

Basic information

species Vitis vinifera
transcript Vv16s0050g01830.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g01830.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os01g43480.2 (Oryza sativa), 5'ss of exon 10
ATGGACTACTGACAAAAGCTGGTGAACGAGTCCTCGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAGGCGATTATCAGGCGGTTTGAGCACAGgtagatttgcatattgtgtcacactcggcatcattttcatcgttttaccgcatttaaactaaagccgtgttgtatggagaaggatatattgaagatagatgaatgtgtcaccatgcttcgagtaggcaaactaatggtatctgtgatgaacag
|||||||  || | ||  |    ||| |  |  | || ||||||||||| |||||||| |||||||||||||| ||| | || ||| | ||||||||||||||  ||| | | || |||    ||   | ||  ||| ||    || | || | |   ||| |   | ||| | |   ||   || | |   | ||||                                                       
ATGGACTCTTGTCTAAGTCCAACGAAAGGATATTAGTCCTTGCTGCAACGAACAGGCCCTTTGACCTTGATGATGCGGTGATAAGGAGATTTGAGCACAGgtatgttt-cgt-ttatgtgtatctaaacttctatttgattaaatt-cagcttct---ctaga--tgagtttttttatgagtcatttgtgttaaatag-------------------------------------------------------

upper sequence: Vv16s0050g01830.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G159307_T01 (Zea mays), 5'ss of exon 11
ATGGACTACTGACAAAAGCTGGTGAACGAGTCCTCGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAGGCGATTATCAGGCGGTTTGAGCACAGgtagatttgcatattgtgtcacactcggcatcattttcatcgttttaccgcatttaaactaaagccgtgttgtatggagaaggatatattgaagatagatgaatgtgtcaccatgcttcgagtaggcaaactaatggtatctgtgatgaacag
|||| ||  || |||   | |   |  || | || ||||||||||| ||||||||||| ||||| ||||||||||| |||||| |  |||| ||||  ||||   | |   |  |     | |||  | | | |||    | |    | |  | |   || | || ||||  | |        | |                                                                   
ATGGCCTCTTGTCAAGGTCGGACCAGAGAATTCTTGTTCTTGCTGCGACCAACAGGCCTTTTGATCTTGATGAGGCTATTATCCGTAGGTTCGAGCGAAGgtttgtatattttctccaagatact-agtaacgtttatg-catccctcagtttgttccctga-gctgtgtcctcttcctttaaacag------------------------------------------------------------------

upper sequence: Vv16s0050g01830.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G058491_T01 (Zea mays), 5'ss of exon 11
ATGGACTACTGACAAAAGCTGGTGAACGAGTCCTCGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAGGCGATTATCAGGCGGTTTGAGCACAGgtagatttgcatattgtgtcacactcggca-tcattttcatcgttttaccgcatttaaactaaagccgtgttgtatggagaaggatatattgaagatagatgaatgtgtcaccatgcttcgagtaggcaaactaatggtatctgtgatgaacag
|||| ||  || ||| | | | | |  || | || |||||||||||||||||| |||| || || ||||||||||| || ||| |  |||| ||||  ||||    ||| |||||    |  |   |  | | |  || ||   |    |   ||    |   ||| ||||| | |  | |   | |                                                                   
ATGGCCTCTTGTCAAGACCGGATCAGAGAATTCTTGTTCTTGCTGCAACCAACCGGCCTTTCGATCTTGATGAGGCTATAATCCGTAGGTTCGAGCGAAGgt----ttgtatatttcacccaaaatgctagtaacatttatgcatccctcaatttgttccctgagctgtgttctcttta-attaacag------------------------------------------------------------------

upper sequence: Vv16s0050g01830.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA10G37380.1 (Glycine max), 5'ss of exon 10
ATGGACTACTGACAAAAGCTGGTGAACGAGTCCTCGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAGGCGATTATCAGGCGGTTTGAGCACAGgtagatttgcatatt-gtgtcacactcggcatcattttc-atcgttttaccgcatttaaactaaagccgtgttgtatggagaaggatatattgaagatagatgaatgtgtcaccatgcttcgagtaggcaaactaatggtatctgtgatgaacag
||||| || |||||||| ||||||| ||| | || |||||||||||||||||||||||||||||||||||||| || ||||| || |||||||||| ||||||      ||  || || | |   | ||||| || |||  | | ||    |  | |   |   |||  | || | |  |  || | | ||   |   |                                                        
ATGGAATATTGACAAAACCTGGTGAGCGAATTCTGGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAAGCAATTATAAGACGGTTTGAGCGCAGgtaagaccacacctttgtcttatggttggcatgatcttctgttgattacttgtgtctgttcagcagctatattttctttattagaaca-atcacaatcatt------------------------------------------------------

upper sequence: Vv16s0050g01830.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA20G30360.1 (Glycine max), 5'ss of exon 10
ATGGACTACTGACAAAAGCTGGTGAACGAGTCCTCGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAGGCGATTATCAGGCGGTTTGAGCACAGgtagatttgca-tattgtgtcacactcggcatcattttc-atcgttttaccgcatttaaactaaagccgtgttgtatggagaaggatatattgaagatagatgaatgtgtcaccatgcttcgagtaggcaaactaatggtatctgtgatgaacag
|||| ||| ||||| || |   ||||||| | || |||||||| ||||||||||||||||||||||||||||| || || || || |||||||||| ||||||      || | |||| | |   | ||||  || |||  | | ||    || | |   | | ||   | || | |  |  || | | |    |   |                                                        
ATGGGCTATTGACAGAACCCAATGAACGAATTCTGGTTCTTGCCGCAACCAACAGGCCATTTGACCTTGATGAAGCAATCATAAGACGGTTTGAGCGCAGgtaagaccacacttttgtcttatggttggcaggatcttctgttgattacttgcttctgttcaacagttatattttctttattagaaca-accacaatcatt------------------------------------------------------

upper sequence: Vv16s0050g01830.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA09G23250.1 (Glycine max), 5'ss of exon 11
ATGGACTACTGACAAAAGCTGGTGAACGAGTCCTCGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAGGCGATTATCAGGCGGTTTGAGCACAGgtagatttgcatattgtgtcacactcggcatcattttcatcgttttaccgcatttaaactaaagccgtgttgt-atggagaaggatatattgaagatagatgaatgtgtcaccatgcttcgagtaggcaaactaatggtatctgtgatgaacag
|||| ||| | ||   | ||  ||| | | |  | ||||| || ||||||||||||||||||||||||||||| || || || || |||||||||| |||||||   | ||  || ||||  | | |    ||   |||| || || |  |  || | | | | |  | |||| ||  |  |    || ||    ||   |                                                     
ATGGGCTATTAACTGGACCTAATGAGCAAATTTTGGTTCTCGCAGCAACCAACAGGCCATTTGACCTTGATGAAGCTATCATAAGACGGTTTGAGCGCAGgtaggactacacctt-tgtcttatt-gtttccaagatcat-gtgttgcttctattcagccacaacatttttgtcatcaaagactgcattttctctatcattat---------------------------------------------------

upper sequence: Vv16s0050g01830.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA16G29290.1 (Glycine max), 5'ss of exon 3
ATGGACTACTGACAAAAGCTGGTGAACGAGTCCTCGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAGGCGATTATCAGGCGGTTTGAGCACAGgtagatttgcatattgtgtcacactcggcatcattttcatcgttttaccgcatttaaactaaagccgtgttgtatggagaaggatatattgaagatagatgaatgtgtcaccatgcttcgagtaggcaaactaatggtatctgtgatgaacag
|||| ||| | |||  | ||  ||| | | |  | |||||||| ||||||||||||||||||||||||||||| || || || || |||||||||   ||||||     ||  || ||||  | | |    |||  |||| || || |  |  || | | | | |  | ||| |   ||||  |       |   |  ||   |   |||                                           
ATGGGCTATTAACAGGACCTAATGAGCAAATTTTGGTTCTTGCAGCAACCAACAGGCCATTTGACCTTGATGAAGCTATCATAAGACGGTTTGAGAGAAGgtaggaccacacctt-tgtcttatt-gtttgcatgatcat-gtgttgcttctattcagcaacaacatttttgcaatcagaacaa-------agactgcatttctccatca-------------------------------------------

upper sequence: Vv16s0050g01830.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA16G29250.1 (Glycine max), 5'ss of exon 1
ATGGACTACTGACAAAAGCTGGTGAACGAGTCCTCGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAGGCGATTATCAGGCGGTTTGAGCACAGgtagatttgcatattgtgtcacactcggcatcattttcatcgttttaccgcatttaaactaaagccgtgttgtatggagaaggatatattgaagatagatgaatgtgtcaccatgcttcgagtaggcaaactaatggtatctgtgatgaacag
|||| ||| | |||  | ||  ||| | | |  | |||||||||||||||||||||| ||||||||||||||| || || || || |||||||||   ||||||     ||  || ||||  | | |    |||  |||| || || |  |  || | | | | |  | | | |   ||||  |       |   |  |    |   |||                                           
ATGGGCTATTAACAGGACCTAATGAGCAAATTTTGGTTCTTGCTGCAACCAACAGGCTATTTGACCTTGATGAAGCTATCATAAGACGGTTTGAGAGAAGgtaggaccacacctt-tgtcttatt-gtttgcatgatcat-gtgttgcttctattcagcaacaacattttcgcaatcagaacaa-------agactgcacttctccatca-------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33404861|gb|CF210488.1|CF210488
EST:     AACAGGCCATTTGACCTTGATGAGGCGATTATCAGGCGGTTTGAGCACAG                         AATTATGGTTGGTCTTCCATCTGTGGAGAGCAGGGAGATGATATTGAAGGC
genomic: AACAGGCCATTTGACCTTGATGAGGCGATTATCAGGCGGTTTGAGCACAGgtagatttgc ... tgatgaacagAATTATGGTTGGTCTACCATCTGTGGAGAGCAGGGAGATGATATTGAAGAC
EST: gi|161708546|gb|FC060419.1|FC060419
EST:     AACAGGCCATTTGACCTTGATGAGGCGATTATCAGGCGGTTTGAGCACAG                         AATTATGGTTGGTCTACCATCTGTGGAGAGCAGGGAGATGATATTGAAGAC
genomic: AACAGGCCATTTGACCTTGATGAGGCGATTATCAGGCGGTTTGAGCACAGgtagatttgc ... tgatgaacagAATTATGGTTGGTCTACCATCTGTGGAGAGCAGGGAGATGATATTGAAGAC