Sequence
atgc intronic sequence ATGC exonic sequenceAAAGTCGAGTTCGGTTGGCACTGATTGATTTCTTGAGGGGACTGGTTGAATTTGATCCTGCAAAGCGGTGGTCACCTTTTCAGgttattgtctttatcacagtatcagcattttatgatcttggaacttgatttctgctgctatgcaatatatatttcaggctgtggatagttagagtttgaactcctattctgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0039g00610.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os02g47410.3 (Oryza sativa), 5'ss of exon 12
AAAGTCGAGTTCGGTTGGCACTGATTGATTTCTTGAGGGGACTGGTTGAATTTGATCCTGCAAAGCGGTGGTCACCTTTTCAGgttattgtctttatcacagtatcagcattttatgatcttggaacttgatttctgctgctatgcaatatatatttcaggctgtggatagttagagtttgaactcctattctgcag
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AAAAGACAGATCGCTTAGCACTGGTTGATTTCTTGAGAGGGCTTGTTGAGTTTGATCCTAATAAGCGGTGGTCACCATTGCAGgtattcactgatgataacatttgattcctatttggttgtactctttgattgtgaatgggaagtcttattaatcccaatatctgaatatgctggg---gaatcc-----------
upper sequence: Vv16s0039g00610.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os02g47410.2 (Oryza sativa), 5'ss of exon 12
------AAAGTCGAGTTCGGTTGGCACTGATTGATTTCTTGAGGGGACTGGTTGAATTTGATCCTGCAAAGCGGTGGTCACCTTTTCAGgttattgtctttatcacagtatcagcattttatgatcttggaacttgatttctgctgctatgcaatatatatttcaggctgtggatagttagagtttgaactcctattctgcag
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AGACAGAAAAGACAGATCGCTTAGCACTGGTTGATTTCTTGAGAGGGCTTGTTGAGTTTGATCCTAATAAGCGGTGGTCACCATTGCAGgtattcactgatgataacatttgattcctatttggttgtactctttgattgtgaatgggaagtcttattaatcccaatatctgaatatgctggg---gaatcc-----------
upper sequence: Vv16s0039g00610.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA16G18110.1 (Glycine max), 5'ss of exon 14
AAAGTCGAGTTCGGTTGGCACTGATTGATTTCTTGAGGGGACTGGTTGAATTTGATCCTGCAAAGCGGTGGTCACCTTTTCAGgttattgtctttatcacagtatcagcattttatgatcttggaacttgatttctgctgctatgcaatatatatttcaggctgtggatagttagagtt-tgaactcctattctgcag
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AAAGTCAAATACGACTGGCTCTTATAGATTTTCTGAAAGGGCTTGTTGAATTTGATCCTGCAAAACGCTGGTCACCCTTTCAGgtaattgactttgtcttattgtccacattggcgcatctttcaaactaaatttggct-tggtttaatgcaaaatttaagctgtaattacttaaaatggtagtttggtttcttgcag
upper sequence: Vv16s0039g00610.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT5G35980.1 (Arabidopsis thaliana), 5'ss of exon 12
AAAGTCGAGTTCGGTTGGCACTGATTGATTTCTTGAGGGGACTGGTTGAATTTGATCCTGCAAAGCGGTGGTCACCTTTTCAGgtt----attgtctttatcacagtatcagcattttatgatcttggaacttgatttctgctgctatgcaatatatatttcaggctgtggatagttagagtttgaactcctattctgcag
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AAACTCAAATCCGGTTAGCTCTTATTGATTTTCTGAAAGGACTTATGGAATTTGATCCAGCAAAACGTTGGTCACCTTTTCAGgtattgaacttccttgcttaagttatctatatatt-tgattttgaaggcttctgttttttgctagccataatggatt----aacatcaacttttcatgttttaag-------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30304109|gb|CB980903.1|CB980903EST: TGAGGGGACTGGTTGAATTTGATCCTGCAAAGCGGTGGTCACCTTTTCAG GCTTCAAAACATCCTTTTGTGACAGGCGAACCTTTCACATGCCCTTACAGA
genomic: TGAGGGGACTGGTTGAATTTGATCCTGCAAAGCGGTGGTCACCTTTTCAGgttattgtct ... tattctgcagGCTTCAAAACATCCTTTTGTGACAGGCGAACCTTTCACATGCCCTTACAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAAGTCGAGTTCGGTTGGCACTGATTGATTTCTTGAGGGGACTGGTTGAATTTGATCCTGCAAAGCGGTGGTCACCTTTTCAGgttattgtctttatcacagtatcagcattttatgatcttggaacttgatttctgctgctatgcaatatatatttcaggctgtggatagttagagtttgaactcctattctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG