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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTAAAGTTCCTGGTAGAACGGAATACTAATAATGCTCTTCATGGTCAAGTTACTATTGGGACACTTATTTTACAGgtatagtttcagctggaagatctatcaacaattgaataacatatcaaggcaaaaaacttgattttttggtgcatatccatacatttcttcaccatggaatatttcag

Basic information

species Vitis vinifera
transcript Vv16s0022g02060.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0022g02060.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os03g03590.2 (Oryza sativa), 5'ss of exon 1
GTGGTAAAGTTCCTGGTAGAACGGAATACTAATAATGCTCTTCATGGTCAAGTTACTATTGGGACACTTATTTTACAGgtatagtttcagctggaagatctatcaacaattgaataacatatcaaggcaaaaaacttgattttttggtgcatatccatacatttcttcaccatggaatatttcag----
             | || ||      ||  |  ||||| ||||||||||||||||| ||||| ||||||||| | ||||| | | |||        | ||| ||| |  || |    ||  | ||  |    | |||  ||  || ||| | ||    | || |  |    | | | | |  ||     
-------------TAGTGGAGAAAGGTAGCACCAATGCGCTTCATGGTCAAGTTACAATTGGTACACTTATTCTTCAGgtttggattccatcct--gttctgtcatccgttta----cacttaaacactcctagctt--ttagttagtgaaaatg---atatgtacttgaaaagaactttagcaatttt

upper sequence: Vv16s0022g02060.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA16G32820.1 (Glycine max), 5'ss of exon 8
GTGGTAAAGTTCCTGGTAGAACGGAATACTAATAATGCTCTTCATGGTCAAGTTACTATTGGGACACTTATTTTACAGgtat-------agtttcagctggaagatctatcaacaattgaataacatatcaaggcaaaaaacttgattttttggtgcatatccatacatttcttcaccatggaatatttcag-----------------------------------
||||| |||||  |||| || ||||||| ||||||||||||||||| ||||||||| |||||||| |||||||| |||||||       | ||| |  ||  | |   || | |  || | |||  ||  |    |       | | | |||  |  |   |     || ||   |   || | |   |                                      
GTGGTGAAGTTTTTGGTGGAGCGGAATAGTAATAATGCTCTTCATGTTCAAGTTACAATTGGGACTCTTATTTTTCAGgtatcttgttgaattttaaatgttaaactcattagcttttca-taaagtaatattatattgtgtatcaatctttcctctaccacttgctatatcaggattgtgcagtgggtttactatttgctttgctcccagttttgggtggtaacag

upper sequence: Vv16s0022g02060.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA09G27940.1 (Glycine max), 5'ss of exon 12
GTGGTAAAGTTCCTGGTAGAACGGAATACTAATAATGCTCTTCATGGTCAAGTTACTATTGGGACACTTATTTTACAGgtatagt-ttcagctggaagatcta--tcaacaa--ttgaataacatatcaaggcaaaaaacttgattttttggtgcatatccatacatttcttcaccatggaatatttcag
||||| |||||  | || || ||||||| |||||||||||| |||| ||||||||| |||||||| |||||||| |||||||  | || || |  ||  |  |  ||   |   ||  ||||  ||  | |   ||||  | || || |   |||||||| |||  || ||  ||||     ||| ||||
GTGGTGAAGTTTTTAGTGGAGCGGAATAGTAATAATGCTCTCCATGTTCAAGTTACAATTGGGACTCTTATTTTTCAGgtatcttgttgagtttaaatgttaaactcgttagcttttcataaagtaatatgctcaaaagttagacttat-attgcatatcaatat-ttcctctaccacttgttatatcag

upper sequence: Vv16s0022g02060.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT5G51710.1 (Arabidopsis thaliana), 5'ss of exon 11
GTGGTAAAGTTCCTGGTAGAACGGAATACTAATAATGCTCTTCATGGTCAAGTTACTATTGGGACACTTATTTTACAGgtatagtttcagctggaagatctatcaacaattgaataacatatcaaggcaaaaaacttgattttttggtgcatatccatacatttcttcaccatggaatatttcag
|||||||||||  ||||||||||||| | ||  | | |||||||||||||||||||||| |||| |||||| || ||||| |   |           || | | |  |||||||||     |     | |||   ||| ||  ||   || ||  | |  ||||                     
GTGGTAAAGTTTTTGGTAGAACGGAACAGTACAAGTTCTCTTCATGGTCAAGTTACTATAGGGATACTTATCTTTCAGgtttcactcacatcactctatat-ttacaaattgaatatttcgtttta-cgaaatttttgtttccttta-gcttaatcttgaattttcag-----------------