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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCAGAAGAGGTTCATGGACCTTAAAGCGCGGTTGGAACTTAAGTCGTATGACCTTTCATTATTTCAGAACAGGGCTGAGCAAAATGAGCATCATAAGgttttgggcctttcctttctcacataaaatatctaggaggaagctttggtgttatgccatatgaagcaatatatttttaccatcaggctgcctcttctcatgtaatatgattctattctttctaatttacattctttttgttttttatttttgcttgcaatgtag

Basic information

species Vitis vinifera
transcript Vv16s0022g00060.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0022g00060.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os01g67740.1 (Oryza sativa), 5'ss of exon 11
TCTTCAGAAGAGGTTCATGGACCTTAAAGCGCGGTTGGAACTTAAGTCGTATGACCTTTCATTATTTCAGAACAGGGCTGAGCAAAATGAGCATCATAAGgttttgggcctttcctttctcacataaaatatctaggaggaagctttggtgttatgccatatgaagcaata-tatttttaccatcaggctgcctcttctcatgtaatatgattctattctttctaatttacattctttttgttttttatttttgcttgcaatgtag
||| ||||||| |||||  ||  | ||| | | ||| ||||| || || |||||||| ||||||||||||||| | | |||||||||||| ||||| ||||| |  |  ||| |||       ||  |     ||  |     ||||    ||    ||  || | ||||| | ||| |     ||                                                                                
TCTGCAGAAGAAGTTCACAGAGTTGAAATCACAGTTTGAACTCAAATCATATGACCTGTCATTATTTCAGAACCGTGTTGAGCAAAATGAACATCACAAGgtatcag--cttacctcatcagtatgga-----taccaaacccctttaagctt---tcagttggatcaataatttttctgtttgcaattcag--------------------------------------------------------------------------

upper sequence: Vv16s0022g00060.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA13G27210.1 (Glycine max), 5'ss of exon 11
TCTTCAGAAGAGGTTCATGGACCTTAAAGCGCGGTTGGAACTTAAGTCGTATGACCTTTCATTATTTCAGAACAGGGCTGAGCAAAATGAGCATCATAAGgttttgggcctttcctttct--------cacataaaatatctaggaggaagctttggtgttatgccatatgaagcaatatatttttaccatcaggctgcctcttctcatgtaatatgattctattctttctaatttacattctttttgttttttatttttgcttgcaatgtag
 |||||||| |  || || || || ||||| |  || ||||| |||| ||| ||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||   | || |||| |           ||||   ||  | ||  ||||  ||   || | || ||        |  ||||          | |   | |   ||||| ||    || | |    ||   ||| |  |  ||     | ||||||||  ||| |      
ACTTCAGAAAAAATTTATAGATCTCAAAGCACAATTAGAACTGAAGTTGTACGACCTTTCATTGTTTCAGAGCAGAGCTGAGCAAAATGAGCATCATAAGgttttgattcctttctttttgtctaaattctataattgattcatgaacaagcactgcaattttacctta------gttccatttaacttgcagtgttatttttctccatgttattcatttttttctgctcctttttgccctaattcc-catcttatttttctttgtag-----

upper sequence: Vv16s0022g00060.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA12G36520.1 (Glycine max), 5'ss of exon 11
TCTTCAGAAGAGGTTCATGGACCTTAAAGCGCGGTTGGAACTTAAGTCGTATGACCTTTCATTATTTCAGAACAGGGCTGAGCAAAATGAGCATCATAAGgttttgggcctttcctttctcaca------taaaat--atctaggaggaagctttggtgttatgccatatgaagcaatatatttttaccatcaggctgcctcttctcatgtaatatgattctattctttctaatttacattctttttgttttttatttttgcttgcaatgtag
 |||||||| |  || || || || ||||| |  || ||||| |||| ||| ||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||   | || |||| |  |       ||||||  ||  | ||  || |  ||   || | || ||    |    || |   | |||  | | |   | |   ||||| |      | | |    ||   || ||  |  |  |   | | ||||||  ||  |      
ACTTCAGAAAAAATTTATAGATCTCAAAGCACAATTAGAACTGAAGTTGTACGACCTTTCATTGTTTCAGAGCAGAGCTGAGCAAAATGAGCATCATAAGgttttgattcctttctttttgtctaaattctaaaattgattcatgaacaaacactgcaattctacctta----gttccatgtaacttcca--atgttatttttctccatgttaatcatctttgtctgctccttttcaccctaatcct-catctcatttttctttatag-----

upper sequence: Vv16s0022g00060.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT5G62410.1 (Arabidopsis thaliana), 5'ss of exon 11
TCTTCAGAAGAGGTTCATGGACCTTAAAGCGCGGTTGGAACTTAAGTCGTATGACCTTTCATTATTTCAGAACAGGGCTGAGCAAAATGAGCATCATAAGgttttgggcctttcctttctc-----------acataaaatatctaggaggaagctttggtgttatgccatatgaagca-atatatttttaccatcaggctgcctcttctcatgtaatatgattctattctttctaatttacattctttttgttttttatttttgcttgcaatgtag
|||||| | ||  ||||  ||  || | || | |||||| || ||| |||||||| | || ||||||  ||| |||||||| |||||||||||||| |||||| |    |  || | | ||           |  |||| |||||  |  |  | |||  | || ||  |  |||| || ||| |||| |||  ||   |  |   |    |   |                                                             
TCTTCAAATGAAATTCACAGATGTTTATGCACAGTTGGAGCTGAAGACGTATGACTTGTCCTTATTTTTGAAGAGGGCTGAACAAAATGAGCATCACAAGgttatatctccatcttctatctatatctttcaagctaaattatctgcgtcgttggttt--ttttgtggtacttgaatcacatacatttatactttccatcacctgttgtatacacag------------------------------------------------------------