Sequence
atgc intronic sequence ATGC exonic sequenceATGAAAGAGCACCTGATGGTCTAGTGGCTGATGCACACCTTTCAGATGGTTTCCTGCATCTCATATTGATTAAAAACTGCCCCCATGCATCCTATTTATGgtatgttaaatgcttctttacctctccatttgactgtaaacatagtatctaatactctattaggttatagtagctacttctgttaacatatatgccatga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0013g01750.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os02g43906.1 (Oryza sativa), 5'ss of exon 6
ATGAAAGAGCACCTGATGGTCTAGTGGCTGATGCACACCTTTCAGATGGTTTCCTGCATCTCATATTGATTAAAAACTGCCCCCATGCATCCTATTTATGgtatgttaaatgcttctttacctctccatttgactgtaaacatagtatctaatactctattaggttatagtagctacttctgttaacatatatgccatga--
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ACGAAAGAGCCCCTGATGGTCTAGTAGCTGACGCACACCTATCTGATGGTTTTCTTCATCTTCTGCTCATTAGAGATTGCCCTCTTCCCTTTTACTTATGgtgagaaatctgttacaagaggtc-cggtgtgcgtattatcccaagtttaaaaagttttcttaatt-taggaagggagtaggtcaatacatggatatccatt
upper sequence: Vv16s0013g01750.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G043414_T03 (Zea mays), 5'ss of exon 12
ATGAAAGAGCACCTGATGGTCTAGTGGCTGATGCACACCTTTCAGATGGTTTCCTGCATCTCATATTGATTAAAAACTGCCCCCATGCATCCTATTTATGgtatgttaaatgcttctttacctctccatttgactgtaaacatagtatctaatactctattaggttatagtagctacttctg-ttaacatatatgccatga-
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ACGAAAGAGCCCCTGATGGCCTGGTAGCTGACGCACACCTTTCGGATGGTTTTCTTCATCTCTTGCTCATAAGAGACTGCCCTCTTCCCCTTTACTTGTGgtgagcgaaatgttgctct-cttgctgagctcatgatcca-atctcttctgactccaggttacttttgactggaaatctcaaatctgtttctcagcgaaaga
upper sequence: Vv16s0013g01750.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA06G47530.1 (Glycine max), 5'ss of exon 11
ATGAAAGAGCACCTGATGGTCTAGTGGCTGATGCACACCTTTCAGATGGTTTCCTGCATCTCATATTGATTAAAAACTGCCCCCATGCATCCTATTTATGgtatgttaaatgcttctttacctc---tccatttgactgtaaacatagtatc-taatactctattaggttatagtagctacttctgttaacatatatgccatga
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ATGAAAAAGCACCGGATGGATTGGTGGCTGACGCACACCTGTCAGATGGTTTCCTTCATCTTATATTGATTAGAGACTGTCCTCATGCATCTTATTTATGgtaaaccccacctgtctttctcacaaatctaatatagcttatacatttcgtaacaatatcctattttgtttccttactgaatgatgtag---------------
upper sequence: Vv16s0013g01750.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA04G14280.1 (Glycine max), 5'ss of exon 11
ATGAAAGAGCACCTGATGGTCTAGTGGCTGATGCACACCTTTCAGATGGTTTCCTGCATCTCATATTGATTAAAAACTGCCCCCATGCATCCTATTTATGgtatgttaaatgcttctttacctctccatttgactgtaaacatagtatctaatactctattaggttatagtagctacttctgttaacatat---atgccatga
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ATGAAAAAGCACCGGATGGATTGGTGGCTGATGCACACCTGTCAGATGGTTTCCTTCATCTTATATTAATTAGAGACTGTCCTCATGTATCTTATTTATGgta-----aacaccacctatctttcaca---aaaatcaaatatag---cttacac---atttagtaacaatatcattttttgtttccttattgaatgatacag
upper sequence: Vv16s0013g01750.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT5G51290.1 (Arabidopsis thaliana), 5'ss of exon 11
ATGAAAGAGCACCTGATGGTCTAGTGGCTGATGCACACCTTTCAGATGGTTTCCTGCATCTCATATTGATTAAAAACTGCCCCCATGCATCCTATTTATGgta---tgttaaatgcttct-ttacctctccatttgactgtaaacatagtatctaatactctattaggttatagtagctacttctgttaacatatatgccatga
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ATGAAAGAGCACCTGATGGGCTTGTTGTGGATGCACACCTCTCCGACGGTTTCCTTCATCTCATACTCATAAAAGATTGTTCTCGTCCCAAGTACTTATGgtaatgtctcgacttttcctattgtcattcattttatgagtaaggcttatatcagagattgtaatgggttacag------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122690394|gb|EC952153.1|EC952153EST: TTCCTGCATCTCATATTGATTAAAAACTGCCCCCATGCATCCTATTTATG GCACCTCACCCAGCTTGCAAGGAGGGGAGGGAACCCCCTAAACTTTGAATT
genomic: TTCCTGCATCTCATATTGATTAAAAACTGCCCCCATGCATCCTATTTATGgtatgttaaa ... ataccaacagGCACCTCACCCAGCTTGCAAGGAGGGGAGGGAACCCCCTAAACTTTGAGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGAAAGAGCACCTGATGGTCTAGTGGCTGATGCACACCTTTCAGATGGTTTCCTGCATCTCATATTGATTAAAAACTGCCCCCATGCATCCTATTTATGgtatgttaaatgcttctttacctctccatttgactgtaaacatagtatctaatactctattaggttatagtagctacttctgttaacatatatgccatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaaaca