1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CTTTTCCATAAGCGAATGCCCCCAGAAGCTGTGGATCTTGTATCAAGGCTGCTTCAGTATTCGCCAAATTTGAGATGCACCGCCgtatgaaatttgaatgctttatataaatttgttcattttcatagtttttccaaactgaaatcttccgaatgcttgtgttgaggtggttttgtttgatttg...
species | Vitis vinifera |
transcript | Vv15s0048g02010.t01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: ATCTTGTATCAAGGCTGCTTCAGTATTCGCCAAATTTGAGATGCACCGCC CTGGAGGCGTGTGCACATCACTTCTTTGATGATTTAAGAGAGACCAATGCCEST: gi|30328496|gb|CD011758.1|CD011758
genomic: ATCTTGTATCAAGGCTGCTTCAGTATTCGCCAAATTTGAGATGCACCGCCgtatgaaatt ... tatcttgcagCTGGAGGCGTGTGCACATCACTTCTTTGATGATTTAAGAGAGACAAATGCC
EST: ATCTTGTATCAAGGCTGCTTCAGTATTCGCCAAATTTGAGATGCACCGCT CTGGAGGCATGTGCACATCACTTCTTTGATGATTTAAGAGAGCCAAATGCCEST: gi|22009072|gb|BQ794106.1|BQ794106
genomic: ATCTTGTATCAAGGCTGCTTCAGTATTCGCCAAATTTGAGATGCACCGCCgtatgaaatt ... tatcttgcagCTGGAGGCGTGTGCACATCACTTCTTTGATGATTTAAGAGAGACAAATGCC
EST: ATCTTGTATCAAGGCTGCTTCAGTATTCGCCAAATTTGAGATGCACCGCT CTGGAGGCGTGTGCACATCACTTCTTTGATGATTTAAGAGAGCCAAATGCCEST: gi|110382179|gb|EC938698.1|EC938698
genomic: ATCTTGTATCAAGGCTGCTTCAGTATTCGCCAAATTTGAGATGCACCGCCgtatgaaatt ... tatcttgcagCTGGAGGCGTGTGCACATCACTTCTTTGATGATTTAAGAGAGACAAATGCC
EST: CTTGTATCAAGGCTGCTTCAGTATTCGCCAAATTTGAGATGCACCGCC CTGGAGGCGTGTGCACATCACTTCTTTGATGATTTAAGAGAGCCAAATGCCEST: gi|110732276|gb|EE107431.1|EE107431
genomic: CTTGTATCAAGGCTGCTTCAGTATTCGCCAAATTTGAGATGCACCGCCgtatgaaatt ... tatcttgcagCTGGAGGCGTGTGCACATCACTTCTTTGATGATTTAAGAGAGACAAATGCC
EST: ATCTTGTATCAAGGCTGCTTCAGTATTCGCCAAATTTGAGATGCACCGCC TEST: gi|110732276|gb|EE107431.1|EE107431
genomic: ATCTTGTATCAAGGCTGCTTCAGTATTCGCCAAATTTGAGATGCACCGCCgtatgaaatt ... tatcttgcag-
EST: ATCTTGTATCAAGGCTGCTTCAGTATTCGCCAAATTTGAGATGCACCGCC TEST: gi|37189535|gb|CF608884.1|CF608884
genomic: ATCTTGTATCAAGGCTGCTTCAGTATTCGCCAAATTTGAGATGCACCGCCgtatgaaatt ... tatcttgcag-
EST: ATCTTGTATCAAGGCTGCTTCAGTATTCGCCAAATTTGAGATGCACCGCC CTGGAGGCGTGTGCACATCACTTCTTTGATGATTTAAGAGAGACAAATGCC
genomic: ATCTTGTATCAAGGCTGCTTCAGTATTCGCCAAATTTGAGATGCACCGCCgtatgaaatt ... tatcttgcagCTGGAGGCGTGTGCACATCACTTCTTTGATGATTTAAGAGAGACAAATGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTTCCATAAGCGAATGCCCCCAGAAGCTGTGGATCTTGTATCAAGGCTGCTTCAGTATTCGCCAAATTTGAGATGCACCGCCgtatgaaatttgaatgctttatataaatttgttcattttcatagtttttccaaactgaaatcttccgaatgcttgtgttgaggtggttttgtttgatttg
- - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactgaaa