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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTATATCTTTAGCTTGTTTATTTGTACCAGAGAAGACAAAACGAACTCTGCTTGATACTCTCAACGAGAATTTGAGGCATCCTAATTCCCAGATACAGgtgtctcttttttagctcaatgactgtttgctcattaggttttatttctctttataatatattgaatttctaatagacatattttttccatgaactgtacag

Basic information

species Vitis vinifera
transcript Vv15s0048g00470.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g00470.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA10G42560.1 (Glycine max), 5'ss of exon 11
ATGTATATCTTTAGCTTGTTTATTTGTACCAGAGAAGACAAAACGAACTCTGCTTGATACTCTCAACGAGAATTTGAGGCATCCTAATTCCCAGATACAGgtgtctcttttttagctc----aatgactgtttgctcattaggttttatttc---tctttataatatattgaatttctaatagacatat---------tttttccatgaactgtacag
||| || ||  ||  |    |  |  || |||| |||| |||   ||  || |||||||||||||| ||||||||||||||||||||||| |||||||||||     |  | |    |    |||  |||||  |   |||  |||| |||    || | |   |||      |    | || | || |         | | | |||    ||| |||
ATGCATCTCCATATATAAAGTGGTATTATCAGAAAAGATAAAGAAAAACCTACTTGATACTCTCAATGAGAATTTGAGGCATCCTAATTCTCAGATACAGgttctattcctctgatacaggcaatttctgttgccattttaacttttgtttaatatcgtcagcttatgccagttgggcactatatatctgaaaatcaatatcttcatttgatgttcag

upper sequence: Vv15s0048g00470.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA20G24470.1 (Glycine max), 5'ss of exon 12
ATGTATATCTTTAGCTTGTTTATTTGTACCAGAGAAGACAAAACGAACTCTGCTTGATACTCTCAACGAGAATTTGAGGCATCCTAATTCCCAGATACAGgtgtctcttttttagctcaatgactgtttgctcattaggttttatttctcttta-taatat-attgaatttctaatagacat-attttttccatgaactgta-cag----------
||| || ||  ||  |    |  |  || |||| |||| |||   ||  || ||||||||||| || ||||||||||| ||||||||||| |||||||||||     |  | |    |||  | | | || | |  |  ||||| |  | |||| || | | |    ||  | | | | ||| || | |   |  | |  || |||          
ATGCATCTCCATATATAAAGTGGTATTATCAGAAAAGATAAAGAAAAGCCTACTTGATACTCTTAATGAGAATTTGAGACATCCTAATTCTCAGATACAGgttatattcctctgatacaagcaatttgtgtt-acca--ttttactattgtttaatattgtcagcttatgccaattgggcattatatatctgacaagcaatatcagcttatgccag