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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATTACCAAAAGGACAACCCATCTTCTTTCAGCTTATCTCCAAGATTTTCAATATTTCCCCAGTTTATATTTCATTTGCGACGTTCTCAGTTTGTTCAGgtataactgactattggtttataattctatctttgcatcttataatcgtagtttgatgatgattaattactctcgccccctcttatcttctctagatttatctctggcaattctttttgtcacag

Basic information

species Vitis vinifera
transcript Vv15s0045g00540.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0045g00540.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os08g36994.1 (Oryza sativa), 5'ss of exon 11
AGATTACCAAAAGGACAACCCATCTTCTTTCAGCTTATCTCCAAGATTTTCAATATTTCCCCAGTTTATATTTCATTTGCGACGTTCTCAGTTTGTTCAGgtataactgactattg-gtttataattctatctttgcatcttataatcgtagtttgatgatgattaattact--ctcgccccctcttatcttctctagatttatctctggcaattctttttgtcacag
||| || || ||||| |  || || |||||||| ||||||||| |  | ||||||||||| || ||||| ||| ||||  | ||||||||||||||||||||| | |||  | |   ||| ||      ||  |   | | |||| ||  ||||||||   || || | |     | |   || |  || |   || |||| ||                        
AGACTATCAGAAGGAAACACCCTCATCTTTCAGTTTATCTCCACGTCTATCAATATTTCCACAATTTATGTTTAATTTAAGGCGTTCTCAGTTTGTTCAGgta-atctgtttctcatgttcattcagtcatgctg--aacatatactctcagtttgatttagactattgagcggattgttgccacggatatctgcttgatt-at------------------------

upper sequence: Vv15s0045g00540.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os09g28610.1 (Oryza sativa), 5'ss of exon 11
AGATTACCAAAAGGACAACCCATCTTCTTTCAGCTTATCTCCAAGATTTTCAATATTTCCCCAGTTTATATTTCATTTGCGACGTTCTCAGTTTGTTCAGgtataactgactattggtttataattctatctttgcatcttataatcgtagtttgatgatgattaattactctcgccccctcttatcttctctagatttatctctggcaattctttttgtcacag
 || || || ||||| ||||| || || || || || || ||  |  | |||||||||||||| ||| | ||| ||||| | |||||||||||||||||||||                    |      |||||    |||  |    | | |||     ||     | ||   ||    ||||     | |   ||| ||| || ||                
TGACTATCAGAAGGAAAACCCTTCATCCTTTAGTTTGTCCCCGCGTATATCAATATTTCCCCAATTTGTTTTTAATTTGAGGCGTTCTCAGTTTGTTCAGgtaggg-----------------agctcgcctttgttcattaagaaaagaatgtgacatgtatgggagattcatacctttgcttactaaatatttgttt-tctatg-cag---------------

upper sequence: Vv15s0045g00540.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G063775_T02 (Zea mays), 5'ss of exon 1
AGATTACCAAAAGGACAACCCATCTTCTTTCAGCTTATCTCCAAGATTTTCAATATTTCCCCAGTTTATATTTCATTTGCGACGTTCTCAGTTTGTTCAGgtataactgactattggtttataattctat-ctttgcatcttataatcgtagtttgatgatgattaattactctcgccccctcttatcttctctagatttatctctggcaattctttttgtcacag
|||||| || ||||| |  || || || ||||| ||||| ||| |  | |||||||||||||| ||||||||| ||||| | |||||||||||||||||||||  ||||    ||  || || | || ||  |||| |  | ||||   ||  |   ||   | |||||| |     |   |                                            
AGATTATCAGAAGGAGACACCCTCATCGTTCAGTTTATCCCCACGGCTATCAATATTTCCCCAATTTATATTTAATTTGAGGCGTTCTCAGTTTGTTCAGgta-gactgttcttt--ttcattaatcaatgttttgaagatgataagtatacatctctggatactaattatttatttctgttgcag----------------------------------------

upper sequence: Vv15s0045g00540.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA03G22740.1 (Glycine max), 5'ss of exon 9
AGATTACCAAAAGGACAACCCATCTTCTTTCAGCTTATCTCCAAGATTTTCAATATTTCCCCAGTTTATATTTCATTTGCGACGTTCTCAGTTTGTTCAGgtataactgactattggtttataattctatctttgcat-cttataatcgtagtttgatgatgattaattactctcgccccctcttatcttctctagatttatctctggcaattctttttgtcacag
 || |  ||||| ||||  |||||||||||||| || ||||| || || |||||||| || || ||||| |||||||| ||||| |||||||||||||||||||          || |||||| |  |   |||  |   || | ||  | ||   |  |  |||   |||| |        ||||| |||  ||  | ||| | |  ||                
GGAATTTCAAAAAGACACTCCATCTTCTTTCAGTTTGTCTCCCAGGTTGTCAATATTCCCTCAATTTATGTTTCATTTACGACGCTCTCAGTTTGTTCAGgtatg---------tgttttatattgttggatttataagtttgtgatatttgtcacagtaatattttgtactttaatgtttacttattttccttaattatatttatcacag---------------

upper sequence: Vv15s0045g00540.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA16G09260.1 (Glycine max), 5'ss of exon 3
AGATTACCAAAAGGACAACCCATCTTCTTTCAGCTTATCTCCAAGATTTTCAATATTTCCCCAGTTTATATTTCATTTGCGACGTTCTCAGTTTGTTCAGgtata-actgactattggtttataattctatctttgcatcttataatcgtagtttgatgatgattaattactctcgccccctcttatcttctctagatttatctctggcaattctttttgtcacag
 || |  ||||| ||||  |||||||||||||| || ||||| || || |||||||| || || ||||| |||||||| ||||| ||||| |||||||||||||    ||  |||||  |   |  | |||      |  || | ||  | |   | ||||  ||  | |||          ||||| |||  ||  | ||| | |  ||                
GGAATTTCAAAAAGACACTCCATCTTCTTTCAGTTTGTCTCCCAGGTTGTCAATATTCCCTCAATTTATGTTTCATTTACGACGCTCTCAATTTGTTCAGgtatgtgttgtgtattg--tcggagctatata-----agtttgtgatatttgccag-tgatatttggt-acttcaatgtttacttattttccttaattatatttatcacag---------------