Sequence
atgc intronic sequence ATGC exonic sequenceGATTTGAGGAAGGAATTCGAGACATGAAACCTGGTGGAAAGAGAAGAATAATTATCCCTCCAGAACTTGGACCTCCAgtgagtttatcaaatctttgttttcatttttcccttcccctttcttgtgcaggtctatctaatcctctattaggaaagaagactgcatttttggtccttg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0021g01850.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os07g30800.1 (Oryza sativa), 5'ss of exon 6
GATTTGAGGAAGGAATTCGAGACATGAAACCTGGTGGAAAGAGAAGAATAATTATCCCTCCAGAACTTGGACCTCCAgtgagtttatcaaatctttgttttcatttttcccttcccctttcttgt-gcaggtctatctaatcctctattaggaaagaagactgcatttttggtccttg--
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GTTTTGAAGAAGGGATACGGGACATGAAACCAGGTGGTAAGAGAAGAATTATTATACCTCCAGAGCTTGGTCCTCCTgtaagttact---atcgctgtttatagggcacagcattgcttgctcatagcaaactttgttttgacttcatgcatatttatgtcgtgtttctcttttcatgta
upper sequence: Vv15s0021g01850.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G488458_T01 (Zea mays), 5'ss of exon 6
GATTTGAGGAAGGAATTCGAGACATGAAACCTGGTGGAAAGAGAAGAATAATTATCCCTCCAGAACTTGGACCTCCAgtgagtttatcaaatctttgttttcatttttcccttcccctttcttgtgc---aggtctatctaatcctctattagg--aaagaagactgcatttttggtccttg
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GTTTTGAAGAAGGCATACGGGACATGAAACCAGGTGGTAAGAGAAGAATTATAATACCTCCAGAGCTTGGTCCTCCTgtaagttacttttggcttgaactt-atgtactccatctgatcccaagtataatagatctgt-taggacattattacatcaacgtggtctctgcgaaagggcc---
upper sequence: Vv15s0021g01850.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA03G26680.1 (Glycine max), 5'ss of exon 6
GATTTGAGGAAGGAATTCGAGACATGAAACCTGGTGGAAAGAGAAGAATAATTATCCCTCCAGAACTTGGACCTCCAgtgagtttatcaaatctttgttttcattt--ttcccttcccctttcttgtgcag--gtctatctaatcctctattaggaaagaagactgcatttttggtccttg
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GATTTGAGGAAGGAATTAGAGACATGAGACCAGGTGGGAAGAGAAGAATCATTATTCCCCCTGAACTTGGACCACCAgtgagttc-caacatctctagttttgttttatcccctttctctaacttactttgtggtctttcca---ttttatttgatattattattgactgcttagaacttg
upper sequence: Vv15s0021g01850.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA07G14250.1 (Glycine max), 5'ss of exon 6
GATTTGAGGAAGGAATTCGAGACATGAAACCTGGTGGAAAGAGAAGAATAATTATCCCTCCAGAACTTGGACCTCCAgtgagtttatcaaatctttgttttcatttttcccttcccct----ttcttgtgcaggtctatctaatcctctattaggaaagaagactgcatttttggtccttg
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GATTTGAGGAAGGAATTAAAGACATGAGACCGGGTGGAAAGAGAAGAATCATTATTCCCCCTGAACTTGGACCACCAgtcagttc-ccacatctctaattttcttttatcccccttctctaactttctttggggtctttcca---tattatttgatattattattgactgcttagtacctgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110732182|gb|EE107246.1|EE107246EST: AACCTGGTGGAAAGAGAAGAATAATTATCCCTCCAGAACTTGGACCTCCA GTGGGGCCTTCGACATTTT-CAGCTCA
genomic: AACCTGGTGGAAAGAGAAGAATAATTATCCCTCCAGAACTTGGACCTCCAgtgagtttat ... tgttgtatagGTGGGGCCTTCGACATTTTTCAGCTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATTTGAGGAAGGAATTCGAGACATGAAACCTGGTGGAAAGAGAAGAATAATTATCCCTCCAGAACTTGGACCTCCAgtgagtttatcaaatctttgttttcatttttcccttcccctttcttgtgcaggtctatctaatcctctattaggaaagaagactgcatttttggtccttg
- - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaagaa