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CAATACGAAGGTTACACAGATGACCCAACAGTTCCTGACCTTTCAAATACCCCAACTTTTGCATCTATGATTCTGCGTATACACAATGAAAGATGGGAAGgtgtgagaatttatttataaattattgcatttaatttatcctctttataaaatacttcactgtttggaggcaagttttctaaacctcccatcagtaaatt...
species | Vitis vinifera |
transcript | Vv14s0171g00490.t01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CCCAACTTTTGCATCTATGATTCTGCGTATACACAATGAAAGATGGGAAG GTGTTCCTTTTATACTTAAAGCAGGGAAAGCACTNANTTCAAGGAAGGCAGEST: gi|351015046|gb|FQ444335.1|FQ444335
genomic: CCCAACTTTTGCATCTATGATTCTGCGTATACACAATGAAAGATGGGAAGgtgtgagaat ... ttctttgcagGTGTTCCTTTTATACTTAAAGCAGGGAAAGCACTAAATTCAAGGAAGGCAG
EST: CCCAACTTTTGCATCTATGATTCTGCGTATACACAATGAAAGATGGGAAG GTGTTCCTTTTATACTTAAAGCAGGGAAAGCACTAAATTCAAGGAAGGCAGEST: gi|110365367|gb|EC928242.1|EC928242
genomic: CCCAACTTTTGCATCTATGATTCTGCGTATACACAATGAAAGATGGGAAGgtgtgagaat ... ttctttgcagGTGTTCCTTTTATACTTAAAGCAGGGAAAGCACTAAATTCAAGGAAGGCAG
EST: CCCAACTTTTGCATCTATGATTCTGCGTATACACAATGAAAGATGGGAAG GTGTTCCTTTTATACTTAAAGCAGGGAAAGCACTAAATTCAAGGAAGGCAGEST: gi|33405782|gb|CF211409.1|CF211409
genomic: CCCAACTTTTGCATCTATGATTCTGCGTATACACAATGAAAGATGGGAAGgtgtgagaat ... ttctttgcagGTGTTCCTTTTATACTTAAAGCAGGGAAAGCACTAAATTCAAGGAAGGCAG
EST: CCCAACTTTTGCATCTATGATTCTGCGTATACACAATGAAAGATGGGAAG GTGTTCCTTTTATACTTAAAGCAGGGAAAGCACTAAATTCAAGGAAGGCAGEST: gi|110361886|gb|EC925389.1|EC925389
genomic: CCCAACTTTTGCATCTATGATTCTGCGTATACACAATGAAAGATGGGAAGgtgtgagaat ... ttctttgcagGTGTTCCTTTTATACTTAAAGCAGGGAAAGCACTAAATTCAAGGAAGGCAG
EST: CCCAACTTTTGCATCTATGATTCTGCGTATACACAATGAAAGATGGGAAG GTGTTCCTTTTATACTTAAAGCAGGGAAAGCACTAAATTCAAGGAAGGCAGEST: gi|294967142|gb|GW840017.1|GW840017
genomic: CCCAACTTTTGCATCTATGATTCTGCGTATACACAATGAAAGATGGGAAGgtgtgagaat ... ttctttgcagGTGTTCCTTTTATACTTAAAGCAGGGAAAGCACTAAATTCAAGGAAGGCAG
EST: CCCAACTTTTGCATCTATGATTCTGCGTATACACAATGAAAGATGGGAAG GTGTTCCTTTTATACTTAAAGCAGGGAAAGCACTAAATTCAAGGAAGGCAGEST: gi|110696408|gb|EE072500.1|EE072500
genomic: CCCAACTTTTGCATCTATGATTCTGCGTATACACAATGAAAGATGGGAAGgtgtgagaat ... ttctttgcagGTGTTCCTTTTATACTTAAAGCAGGGAAAGCACTAAATTCAAGGAAGGCAG
EST: CCCAACTTTTGCATCTATGATTCTGCGTATACACAATGAAAGATGGGAAG GTGTTCCTTTTATACTTAAAGCAGGGAAAGCACTAAATTCAAGGAAGGCAGEST: gi|56409520|gb|CX017772.1|CX017772
genomic: CCCAACTTTTGCATCTATGATTCTGCGTATACACAATGAAAGATGGGAAGgtgtgagaat ... ttctttgcagGTGTTCCTTTTATACTTAAAGCAGGGAAAGCACTAAATTCAAGGAAGGCAG
EST: CCCAACTTTTGCATCTATGATTCTGCGTATACACAATGAAAGATGGGAAG GTGTTCCTTTTATACTTAAAGCAGGGAAAGCACTAAATTCAAGGAAGGCAGEST: gi|110416304|gb|EC982275.1|EC982275
genomic: CCCAACTTTTGCATCTATGATTCTGCGTATACACAATGAAAGATGGGAAGgtgtgagaat ... ttctttgcagGTGTTCCTTTTATACTTAAAGCAGGGAAAGCACTAAATTCAAGGAAGGCAG
EST: CCCAACTTTTGCATCTATGATTCTGCGTATACACAATGAAAGATGGGAAG GTGTTCCTTTTATACTTAAAGCAGGGAAAGCACTAAATTCAAGGAAGGCAG
genomic: CCCAACTTTTGCATCTATGATTCTGCGTATACACAATGAAAGATGGGAAGgtgtgagaat ... ttctttgcagGTGTTCCTTTTATACTTAAAGCAGGGAAAGCACTAAATTCAAGGAAGGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATACGAAGGTTACACAGATGACCCAACAGTTCCTGACCTTTCAAATACCCCAACTTTTGCATCTATGATTCTGCGTATACACAATGAAAGATGGGAAGgtgtgagaatttatttataaattattgcatttaatttatcctctttataaaatacttcactgtttggaggcaagttttctaaacctcccatcagtaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaggcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagtaaa