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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTTGATACATTAAGGACAACAATGTTTATACTAGGAATGATGTCTGTGTTCATAGGCATTTCATTGCTGGCACCTGATGAGCCAAAAGgtattttaacaaagactttcaatttatagagaggataaagatggaaactaactgcaaaatttttcag

Basic information

species Vitis vinifera
transcript Vv14s0068g00780.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0068g00780.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA02G07510.2 (Glycine max), 5'ss of exon 12
GTATTTGATACATTAAGGACAACAATGTTTATACTAGGAATGATGTCTGTGTTCATAGGCATTTCATTGCTGGCACCTGATGAGCCAAAAGgtat-----tttaacaaagactttc--aatttatagag---aggataaagatggaaactaac--tgcaaaatttttcag--------
||||||||| |||||||||||||||||||||| || |||||||||| |||||| || |||||||| |||||||||||||||||  |||||||||      ||| | ||  | |||     |||||| |    | | ||   || | |    |   | | ||| ||| |          
GTATTTGATGCATTAAGGACAACAATGTTTATGCTTGGAATGATGTGTGTGTTTATTGGCATTTCTTTGCTGGCACCTGATGAATCAAAAGgtactataatttgataattattttatggttttatataattcaaggtatgcattgcagaggataatacgaaactttgcttttgagaag

upper sequence: Vv14s0068g00780.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA16G26550.1 (Glycine max), 5'ss of exon 12
GTATTTGATACATTAAGGACAACAATGTTTATACTAGGAATGATGTCTGTGTTCATAGGCATTTCATTGCTGGCACCTGATGAGCCAAAAGgtatt-----ttaacaaagactttcaatttatagag---aggataaagatggaaactaac--tgcaaaatttttcag-------
||||||||| ||||||||||||| ||||||||||| |||||||||| |||||| || |||||||| |||||||||||||||||  ||||||||| |     || |  |  | |||    || || |    | | |||  || | |    |   | | ||| |||           
GTATTTGATGCATTAAGGACAACGATGTTTATACTTGGAATGATGTGTGTGTTTATTGGCATTTCTTTGCTGGCACCTGATGAATCAAAAGgtactataatttgatgattattttatggttttataattcaaggtaagcattgcagaggataatacgaaactttgttttgagaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351040762|gb|FQ438306.1|FQ438306
EST:     GATGTCTGTGTTCATAGGCATTTCATTGCTGGCACCTGATGAGCCAAAAG                         GTGGTGAAACCAAAGAAAATTC
genomic: GATGTCTGTGTTCATAGGCATTTCATTGCTGGCACCTGATGAGCCAAAAGgtattttaac ... aatttttcagGTGGTGAAACCAAAGATAATTC
EST: gi|351046211|gb|FQ442589.1|FQ442589
EST:     GATGTCTGTGTTCATAGGCATTTCATTGCTGGCACCTGATGAGCCAAAAG                         GTGGTGAAACCAAAGATAATTCAACTTTAGCATCCATCACATCTTCAAGCG
genomic: GATGTCTGTGTTCATAGGCATTTCATTGCTGGCACCTGATGAGCCAAAAGgtattttaac ... aatttttcagGTGGTGAAACCAAAGATAATTCAACTTTAGCATCCATCACATCTTCAAGCA
EST: gi|351030030|gb|FQ430772.1|FQ430772
EST:     GATGTCTGTGTTCATAGGCATTTCATTGCTGGCACCTGATGAGCCAAAAG                         GTGGTGAAACAAAAGATAATTCAACTTTAGCATCCATCACAATCT-CAAGC
genomic: GATGTCTGTGTTCATAGGCATTTCATTGCTGGCACCTGATGAGCCAAAAGgtattttaac ... aatttttcagGTGGTGAAACCAAAGATAATTCAACTTTAGCATCCATCACA-TCTTCAAGC
EST: gi|351013510|gb|FQ425541.1|FQ425541
EST:     ATGTCTGTGTTCATAGGCATTTCATTGCTGGCACCTGATGAGCCCAAAAG                         -TGGTGAAACCAAAGATAATTCACCTTTAGCAT
genomic: ATGTCTGTGTTCATAGGCATTTCATTGCTGGCACCTGATGAGCC-AAAAGgtattttaac ... aatttttcagGTGGTGAAACCAAAGATAATTCAACTTTAGCAT
EST: gi|22008856|gb|BQ793890.1|BQ793890
EST:     GATGTCTGTGTTCATAGGCATTTCATTGCTGGCACCTGATGAGCCAAAAG                         GTGGTGAAACCAAAGATAATTCAACTTTAGCATCCATCACATCTACAAGCA
genomic: GATGTCTGTGTTCATAGGCATTTCATTGCTGGCACCTGATGAGCCAAAAGgtattttaac ... aatttttcagGTGGTGAAACCAAAGATAATTCAACTTTAGCATCCATCACATCTTCAAGCA