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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGGGTGGTATTTCGACAAGGTGTTGAGGGTGGTTTCCAGGGCAGAACCAATAAATTGGTTGATGGTTGCTATTCCTTTTGGCAGgtgattttcattttctttaccccatcatattattattgcttttgattaatagtggattaaataaaaaaatgaccag

Basic information

species Vitis vinifera
transcript Vv14s0066g01310.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0066g01310.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os01g53600.1 (Oryza sativa), 5'ss of exon 11
GATTGGGTGGTATTTCGACAAGGTGTTGAGGGTGGTTTCCAGGGCAGAACCAATAAATTGGTTGATGGTTGCTATTCCTTTTGGCAGgtgattttcat-tttctttaccccatcatattattattgcttttgattaatagtggattaaataaaaaaatgaccag
|  ||||||| |||||| ||||| || ||  |||| || || ||  |||| ||||||||||||||||||||||| |||||||||||||| | |  |||   | |||      || |   ||  |    | |   | | |      |          ||||||||
GGCTGGGTGGCATTTCGCCAAGGAGTGGAATGTGGATTTCAAGGACGAACTAATAAATTGGTTGATGGTTGCTACTCCTTTTGGCAGgttaatgccatacctgttttttttttcctggcatcctccactctatctgacaaacttctggt-----gtatgaccag

upper sequence: Vv14s0066g01310.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G158562_T04 (Zea mays), 5'ss of exon 10
GATTGGGTGGTATTTCGACAAGGTGTTGAGGGTGGTTTCCAGGGCAGAACCAATAAATTGGTTGATGGTTGCTATTCCTTTTGGCAGgtgattttcattttctttaccccatcatattattattgcttttgattaatagtggattaaataaaaaaatgaccag
|  |||||||  ||||| ||||| || ||  | || || || ||  |||| ||||||||||||||||||||||| |||||||||||||| ||| | |  |   |   |   |    ||   |    || || |  ||  |  |  ||   |            
GGCTGGGTGGCTTTTCGTCAAGGAGTGGAATGCGGATTTCAAGGACGAACTAATAAATTGGTTGATGGTTGCTACTCCTTTTGGCAGgtaattgtaacatctgtctacttttatctttgccacatgttgtgctccatgttacagaaatctag-----------

upper sequence: Vv14s0066g01310.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G158562_T03 (Zea mays), 5'ss of exon 9
GATTGGGTGGTATTTCGACAAGGTGTTGAGGGTGGTTTCCAGGGCAGAACCAATAAATTGGTTGATGGTTGCTATTCCTTTTGGCAGgtgattttcattttctttaccccatcatattattattgcttttgattaatagtggattaaataaaaaaatgaccag
|  |||||||  ||||| ||||| || ||  | || || || ||  |||| ||||||||||||||||||||||| |||||||||||||| ||| | |  |   |   |   |    ||   |    || || |  ||  |  |  ||   |     |||||||
GGCTGGGTGGCTTTTCGTCAAGGAGTGGAATGCGGATTTCAAGGACGAACTAATAAATTGGTTGATGGTTGCTACTCCTTTTGGCAGgtaattgtaacatctgtctacttttatctttgccacatgttgtgctccatgttacagaaatctagtgtgtgaccag

upper sequence: Vv14s0066g01310.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA13G23780.1 (Glycine max), 5'ss of exon 11
GATTGGGTGGTATTTCGACAAGGTGTTGAGGGTGGTTTCCAGGGCAGAACCAATAAATTGGTTGATGGTTGCTATTCCTTTTGGCAGgtgattttcattttctttaccccatcatattattattgcttttgattaatagtggattaaataaaaaaatgaccag
|| ||||||||||| |||||||||   ||  |||| |||||||| ||||| |||||| |||| ||||| ||||||||||||||||||||||||   ||||  | |   |       | | | ||  || ||||  |   ||  | |||    ||  | | |||
GACTGGGTGGTATTCCGACAAGGTAAGGAATGTGGATTCCAGGGGAGAACAAATAAACTGGTGGATGGATGCTATTCCTTTTGGCAGgtgattaaaatttggtattttcttct---tcaatcttctttgtgatatagtttgattgaaacttgaatgtaatcag

upper sequence: Vv14s0066g01310.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA06G19740.1 (Glycine max), 5'ss of exon 11
GATTGGGTGGTATTTCGACAAGGTGTTGAGGGTGGTTTCCAGGGCAGAACCAATAAATTGGTTGATGGTTGCTATTCCTTTTGGCAGgtgattttcattttctttaccccatcatattattattgcttttgattaatagtggattaaataaaaaaatgaccag
|| |||| |||||| || ||||||   ||  |||| |||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||   |||||  ||   |      || | | ||  || ||||  |    |  | |||    ||  | | |||
GAATGGGCGGTATTCCGGCAAGGTAAGGAATGTGGATTCCAGGGGAGAACAAATAAATTGGTGGATGGATGCTATTCCTTTTGGCAGgtgattgaaattttactttttcttc---atcaatcttctttgtgatatagttcgattgaaacttgaatgtaatcag

upper sequence: Vv14s0066g01310.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: EFJ21944 (Selaginella moellendorffii), 5'ss of exon 11
GATTGGGTGGTATTTCGACAAGGT---GTTGAGGGTGGTTTCCAGGGCAGAACCAATAAATTGGTTGATGGTTGCTATTCCTTTTGGCAGgtg-attttcattttctttaccccatcatattattattgcttttgattaatagtggattaaataaaaaaatgaccag
 | ||||  |  ||||| |||||    || || || || ||||||||| | || |||||||| || ||||| |||||||| ||||||||||||    ||  |||| ||       | ||   ||||||| |  |  ||| |  |  |||  ||  | |         
AACTGGGCTGCGTTTCGTCAAGGAAAGGTCGAAGGAGGCTTCCAGGGCCGCACAAATAAATTAGTCGATGGATGCTATTCGTTTTGGCAGgtgcggctttcttttattcgttttctaatga-attattgttcctccttact--tttattgtatgcacag--------

upper sequence: Vv14s0066g01310.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: EFJ18214 (Selaginella moellendorffii), 5'ss of exon 11
GATTGGGTGGTATTTCGACAAGGT---GTTGAGGGTGGTTTCCAGGGCAGAACCAATAAATTGGTTGATGGTTGCTATTCCTTTTGGCAGgtg--attttcattttctttaccccatcatattattattgcttttgattaatagtggattaaataaaaaaatgaccag
 | ||||  |  ||||| |||||    ||||| || || ||||||||| | || |||||||| || ||||| |||||||| ||||||||||||     ||  |||  ||       | ||   ||||||| |  |  ||| |  ||   ||   | |           
AACTGGGCTGCGTTTCGTCAAGGAAAGGTTGAAGGAGGCTTCCAGGGCCGCACAAATAAATTAGTCGATGGATGCTATTCGTTTTGGCAGgtgcgggctttctttcattcgttttctaatga-attattgttcctccttacttttgttgtatgcacag----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71870690|gb|DT019745.1|DT019745
EST:     TCCAGGGCAGAACCAATAAATTGGTTGATGGTTGCTATTCCTTTTGGCAG                         GGAGGTGTTTTTGCATTAATACAAAAACTACATTCAATCATTGAGGAACAA
genomic: TCCAGGGCAGAACCAATAAATTGGTTGATGGTTGCTATTCCTTTTGGCAGgtgattttca ... aaatgaccagGGAGGTGTTTTTGCATTAATACAAAAACTACATTCAATCATTGAGGAACAA
EST: gi|71865931|gb|DT014986.1|DT014986
EST:     TCCAGGGCAGAACCAATAAATTGGTTGATGGTTGCTATTCCTTTTGGCAG                         GGAGGTGTTTTTGCATTAATACAAAAACTACATTCAATCATTGAGGAACAA
genomic: TCCAGGGCAGAACCAATAAATTGGTTGATGGTTGCTATTCCTTTTGGCAGgtgattttca ... aaatgaccagGGAGGTGTTTTTGCATTAATACAAAAACTACATTCAATCATTGAGGAACAA