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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTTGCATTTACCAAGCATTTGATTCATTTGTATGCTTATACTGGGTCAAATGAACTACGCCAACATTTAGAGgtgagttcggattctggtgcctttccagaaaggccaaacctaatagctatttgacttgcttgctttgctcttgcag

Basic information

species Vitis vinifera
transcript Vv14s0060g01680.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA19G41840.2 (Glycine max), 5'ss of exon 11
GGGTTGCATTTACCAAGCATTTGATTCATTTGTATGCTTATACTGGGTCAAATGAACTACGCCAACATTTAGAGgtgagttcggattctggtgcctttccagaaaggccaaaccta--atagctatttgacttgc-ttgctttgctcttgcag
| ||||||||||| || ||||||||||| |||||||| || ||||| ||||||||  |    || | | |||||||||| |   |||||      | ||   |    |||||  |   || || |||||| || | ||   ||||   | |||
GTGTTGCATTTACTAAACATTTGATTCACTTGTATGCCTACACTGGATCAAATGAGTTGGCTCAGCGTATAGAGgtgagatt--attct------tatcataagtaaccaaagttgtgattgcaatttgatttacattttcttgcggatacag

upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA03G39290.1 (Glycine max), 5'ss of exon 12
GGGTTGCATTTACCAAGCATTTGATTCATTTGTATGCTTATACTGGGTCAAATGAACTACGCCAACATTTAGAGgtgagttcggattctggtgcctttccagaaaggccaaaccta--atagctatttgacttgc-ttgctttgctcttgcag
| ||||||||||| || ||||||||||| |||||||| || ||||| ||||||||  |    || | | |||||||||| |   |||||      | ||   |    |||||  |   || || |||||| || | ||   |||||  |||||
GTGTTGCATTTACTAAACATTTGATTCACTTGTATGCCTACACTGGATCAAATGAGTTGGCTCAGCGTATAGAGgtgagatt--attct------tatcagaactaaccaaagttgcgattgcaatttgatttacattttcttgctgatgcag