Sequence
atgc intronic sequence ATGC exonic sequenceATTTTGGAGGAGCTGAATCTTACCATGGATCAATTCATTGACCTGTGCATTCTTTCAGGGTGTGATTATTGTGACAGCATTCGAGgtattaatatcaaagattcttggtctatcaaatgcatatatgtttttttccatatgtagatattcagaaaatgataagactatccatgcatcttgtagta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0060g00210.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os05g46270.1 (Oryza sativa), 5'ss of exon 11
ATTTTGGAGGAGCTGAATCTTACCATGGATCAATTCATTGACCTGTGCATTCTTTCAGGGTGTGATTATTGTGACAGCATTCGAGgtattaata-tcaaagattcttggtctatcaaatgcatatatgttttt--ttccatatgtagatattcagaaaa------tgataagactatccatgcat-cttgt--agta-
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GTTTTGGAGGAGCTTGAACTCACTATGGACCAATTCATTGACTTGTGCATCCTATCTGGATGTGACTATTGTGATAGCATTAAAGgtatttttgctttccctcttctcatgagtagtattcctataaattcttgcttgcttgaatttctgtccatgcaaactttttttcctaaccaactatgtgtgcttgtccgctag
upper sequence: Vv14s0060g00210.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA10G28200.1 (Glycine max), 5'ss of exon 11
ATTTTGGAGGAGCTGAATCTTACCATGGATCAATTCATTGACCTGTGCATTCTTTCAGGGTGTGATTATTGTGACAGCATTCGAGgtattaatatcaaagattctt-----------ggtctatcaaa---tgcatatatgtttttt--------tccatatgtagatattcagaaaatg-ataagactatccatgcatcttgtagta
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ATTTTGGAGGAGCTAAATATGACCATGGACCAATTTATTGACTTATGCATTCTTTCTGGCTGTGATTATTGTGACAGCATTCGAGgtat-atttttagccatttttatttgtatgatgctttgtctaagtttggttttatgatttctgtatgaactctatgtgcatatatttatatagtataaatgataaatgatgtgtggtgcag--
upper sequence: Vv14s0060g00210.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA20G22190.2 (Glycine max), 5'ss of exon 11
ATTTTGGAGGAGCTGAATCTTACCATGGATCAATTCATTGACCTGTGCATTCTTTCAGGGTGTGATTATTGTGACAGCATTCGAGgtat--------taatatcaaagattcttggtcta---tcaaatgcatatatgtttttt----tccatatgtagatattcagaaaatg-ataagactatccatgcatcttgtagta
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ATTTTGGAGGAGCTAAATATGACCATGGACCAATTTATTGACTTATGCATTCTTTCTGGCTGTGATTATTGTGACAGCATTCGAGgtatatttttactcatttgtatgatgcttggtctaagtttggttctatgattgctgtatgaactctatgtgcatatatgtatatcgtataaataataaatgatgtgtggcacag--
upper sequence: Vv14s0060g00210.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT5G26680.2 (Arabidopsis thaliana), 5'ss of exon 11
ATTTTGGAGGAGCTGAATCTTACCATGGATCAATTCATTGACCTGTGCATTCTTTCAGGGTGTGATTATTGTGACAGCATTCGAGgtattaatatcaaagattcttggtctatcaaatgcatatatgtttttttccatatgtagatattcagaaaatgataagactatccatgcatcttgtagta---
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ATTTTAGAAGAGCTTCAACTTACCATGGATCAGTTCATCGACTTGTGTATATTGTCTGGATGTGACTATTGTGACAGCATCCGAGgtatctagat-atagatc------------aatat---tgtgttattttctctgtg-aattgtagaacgcaagttagaaactaatatgtattttgtgaaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110418849|gb|EC985030.1|EC985030EST: CATTGACCTGTGCATTCTTTCAGGGTGTGATTATTGTGACAGCATTCGAG GTATTGGGGGGCAGACTGCATTGAAGCTCATCCGCCAACATGGCTCCATCG
genomic: CATTGACCTGTGCATTCTTTCAGGGTGTGATTATTGTGACAGCATTCGAGgtattaatat ... aatgcatcagGTATTGGGGGGCAGACTGCATTGAAGCTCATCCGCCAACATGGCTCCATCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTTTGGAGGAGCTGAATCTTACCATGGATCAATTCATTGACCTGTGCATTCTTTCAGGGTGTGATTATTGTGACAGCATTCGAGgtattaatatcaaagattcttggtctatcaaatgcatatatgtttttttccatatgtagatattcagaaaatgataagactatccatgcatcttgtagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atcaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gataaga