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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGTTGTGCGAAGGATCAACTGCATAGTTGAGCCTCTGGAATTTGGAGTTGTGATTTCTGGAAAGTTGTGGTGCAACAGGCAGGCAATTTTTCCCAAGGgtatgttgcatgtgaattatccacaaagataatagttttggaagcatagattttgtcccaaaatgaaagaatggatgcacgtgtacttatttattttgtttgatgcag

Basic information

species Vitis vinifera
transcript Vv14s0036g00570.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0036g00570.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA10G31510.1 (Glycine max), 5'ss of exon 9
AAGGTTGTGCGAAGGATCAACTGCATAGTTGAGCCTCTGGAATTTGGAGTTGTGATTTCTGGAAAGTTGTGGTGCAACAGGCAGGCAATTTTTCCCAAGGgtatgttgcatgtgaattatccacaa-agataatagttttggaagcatagattttgtcccaaaatgaaagaatggatgcacgtgtacttatttattttgtttgatgcag
|||||||| ||  | ||||||||||  ||||| ||  | ||||||||||||||| | ||||||||||  |||||||  || ||||| || ||||| ||||||||||      |   |  |||| ||   || | || |||      ||   | ||      |  |   |   ||  |     || |   | |||  ||  |||||||||
AAGGTTGTCCGGCGCATCAACTGCAATGTTGAACCATTAGAATTTGGAGTTGTGCTCTCTGGAAAGTCTTGGTGCAGTAGTCAGGCTATCTTTCCAAAGGgtatgt-----atacttggtccataatgaattacagcttt-----tatgactgtttaattgagtttgtaagctgtgtatttatgca---aattaaattaattgatgcag

upper sequence: Vv14s0036g00570.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA20G36070.1 (Glycine max), 5'ss of exon 9
AAGGTTGTGCGAAGGATCAACTGCATAGTTGAGCCTCTGGAATTTGGAGTTGTGATTTCTGGAAAGTTGTGGTGCAACAGGCAGGCAATTTTTCCCAAGGgtatgttgcatgtgaattatccacaaaga-taatagttttggaagcatagattttgtcccaaaatgaaagaatggatgcacgtgtacttatttattttgtttgatgcag
|||||||| ||  | ||||||||||  ||||| ||  | ||||||||||| ||| ||||||||||||  |||||||  || ||||| || ||||| ||||||||||      |   |  |||| || || | | || |||     ||  |  |||     |   || |||  ||  |     || |   | |||  ||  |||||||||
AAGGTTGTCCGGCGCATCAACTGCAATGTTGAACCATTAGAATTTGGAGTAGTGCTTTCTGGAAAGTCTTGGTGCAGTAGTCAGGCTATATTTCCAAAGGgtatgt-----atacttggtccataatgaattacagcttttatgacagcg--tttaattgagtttgtaagc-tgtgtatttatgaa---aattaaattaattgatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|56408484|gb|CX016736.1|CX016736
EST:     TGTGATTTCTGGAAAGTTGTGGTGCAACAGGCAGGCAGTTTTTCCCAAGG                         GGTTTCGAAGTCGGGTTAAATACATAAGTGTTTTGGATCCAACAAATATGT
genomic: TGTGATTTCTGGAAAGTTGTGGTGCAACAGGCAGGCAATTTTTCCCAAGGgtatgttgca ... tttgatgcagGGTTTCGAAGTCGGGTTAAATACATAAGTGTTTTGGATCCAACAAATATGT
EST: gi|56408652|gb|CX016904.1|CX016904
EST:     TGTGATTTCTGGAAAGTTGTGGTGCAACAGGCAGGCAGTTTTTCCCAAGG                         GGTTTCGAAGTCGGGTTAAATACATAAGTGTTTTGGATCCAACAAATATGT
genomic: TGTGATTTCTGGAAAGTTGTGGTGCAACAGGCAGGCAATTTTTCCCAAGGgtatgttgca ... tttgatgcagGGTTTCGAAGTCGGGTTAAATACATAAGTGTTTTGGATCCAACAAATATGT
EST: gi|161706481|gb|FC055002.1|FC055002
EST:     TGTGATTTCTGGAAAGTTGTGGTGCAACACGCAGGCAATTTTTCCCAAGG                         GGTTTCGAAGTCGGGTTAAATACATAAGTGTTTTGGATCCAACAAATATGT
genomic: TGTGATTTCTGGAAAGTTGTGGTGCAACAGGCAGGCAATTTTTCCCAAGGgtatgttgca ... tttgatgcagGGTTTCGAAGTCGGGTTAAATACATAAGTGTTTTGGATCCAACAAATATGT
EST: gi|110711369|gb|EE087767.1|EE087767
EST:     TGTGATTTCTGGAAAGTTGTGGTGCAACAGGCAGGCAATTTTTCCCAAGG                         GGTTTCGAAGTCGGGTTAAATACATAAGTGTTTTGGATCCAACAAATATGT
genomic: TGTGATTTCTGGAAAGTTGTGGTGCAACAGGCAGGCAATTTTTCCCAAGGgtatgttgca ... tttgatgcagGGTTTCGAAGTCGGGTTAAATACATAAGTGTTTTGGATCCAACAAATATGT