Sequence
atgc intronic sequence ATGC exonic sequenceATCTCCTTTACACCCCAGACGCAGACTTCTCTTGCTTTGCCGATCTAGCACTTTCATCTCCAGAAGATTACTACATTGAGGGACAAGGTTCATTGCTCCAgtaagcgaaattttcttcttgtttgttttattactactgtttttatcattaatactcttgattttaatgtgtttctattttgagataatacaaaacaacc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0030g01740.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os07g10490.1 (Oryza sativa), 5'ss of exon 11
ATCTCCTTTACACCCCAGACGCAGACTTCTCTTGCTTTGCCGATCTAGCACTTTCATCTCCAGAAGATTACTACATTGAGGGACAAGGTTCATTGCTCCAgtaagcgaaattttcttcttgtttgttttattactactgtttttatcattaatactcttgattttaatgtgtttctattttgagataatacaaaacaacc---
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ATCTTCTCTACACTCCAGATGCAGATTTTTCATGTTTTTCAGACCTTGCACTTTCATCTCCTGCTGACTACTACATTGAAGGACAAGGTTCCTTGATCCAgtaaggctactttctcttccatgttctttgcttttgtggtctgga--attaagtttgaccattc-agtgttcttgacatttgatatcattcactattgtagct
upper sequence: Vv14s0030g01740.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA20G37170.1 (Glycine max), 5'ss of exon 11
ATCTCCTTTACACCCCAGACGCAGACTTCTCTTGCTTTGCCGATCTAGCACTTTCATCTCCAGAAGATTACTACATTGAGGGACAAGGTTCATTGCTCCAgtaagcgaaattttcttcttgtttgttttattactactgtttttatcattaatactcttgattttaatgtgtttctatt-ttgagataatacaaaacaacc
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ACCTTCTCTATACACCCGATGCAGATTTTTCTTGCTTTGCAGACCTTGCACTTTCATCTCCAGAAGATTATTACATTGAGGGACAAGGATCATTGCTCCAgtaagtgtttgcaatctcacacttctaaattttcacttccattcatgagttgtttacttgaaaataatttataagaaagatttaagtgttttgcttgagt-
upper sequence: Vv14s0030g01740.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA10G30220.1 (Glycine max), 5'ss of exon 11
ATCTCCTTTACACCCCAGACGCAGACTTCTCTTGCTTTGCCGATCTAGCACTTTCATCTCCAGAAGATTACTACATTGAGGGACAAGGTTCATTGCTCCAgtaagcgaaattttcttcttgtttgttttattactactgtttttatcattaatactcttgattttaatgtgtttctattttgagataatacaaaacaacc------
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ACCTTCTCTATACACCCGATGCAGATTTTTCTTGCTTTGCAGACCTTGCACTTTCATCTCCAGAGGATTATTACATTGAGGGACAAGGATCATTGCTCCAgtaagtgt--ttgtaatcttgcacttctaa--attttcacttccattcatga-gttgtttacctgaaaatattt-taaggaaagatttaattaagtgacttgcttgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294965914|gb|GW839253.1|GW839253EST: CTTTCATCTCCAGAAGATTACTACATTGAGGGACAAGGTTCATTGCTCCA ATGTGTGCTTACACCGGGTGATCCCTACATGCCTTTACCAAATGCTGAAAT
genomic: CTTTCATCTCCAGAAGATTACTACATTGAGGGACAAGGTTCATTGCTCCAgtaagcgaaa ... catctttcagATGTGTGCTTACACCGGGTGATCCCTACATGCCTTTACCAAATGCTGAAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCTCCTTTACACCCCAGACGCAGACTTCTCTTGCTTTGCCGATCTAGCACTTTCATCTCCAGAAGATTACTACATTGAGGGACAAGGTTCATTGCTCCAgtaagcgaaattttcttcttgtttgttttattactactgtttttatcattaatactcttgattttaatgtgtttctattttgagataatacaaaacaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaacaa