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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCTGTTCACAAGGAACCATCCTTTACCATTCCTGGAACCCCAGGAATTGTGCAGCATGAGATTCTAAATAATAGAAGGCATGTCTTGACTAAGgtaattacgatgcttcctcttattttacgataagataattattacttttacgatcaatttctaattcagatttgaatggttattttgttgaatgtgattttgcaaattgacactatacttctccacaatag

Basic information

species Vitis vinifera
transcript Vv14s0030g01350.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g01350.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os12g06810.3 (Oryza sativa), 5'ss of exon 1
----GTTCCTGTTCACAAGGAACCATCCTTTACCATTCCTGGAACCCCAGGAATTGTGCAGCATGAGATTCTAAATAATAGAAGGCATGTCTTGACTAAGgtaattacgatgcttcctcttattttacgataagataattattacttttacgatcaatttctaattcagatttgaatggttattttgttgaatgtgattttgcaaattgacactatacttctccacaatag
    || ||| | ||||| |||||||| |  |  |||||||||   |||| |||    ||||||||||| || ||||||||||| ||||| ||||| ||||| ||||| |   ||  |   ||  |  | |   |  ||||  |  || || |  | ||      |  |  |||      |||||  | |                                         
TTAGGTCCCTATACACAAAGAACCATCTTCAATTATTCCTGGAGTTCCAGCAATAACTCAGCATGAGATCCTGAATAATAGAAGACATGTATTGACGAAGgtgattacaagtgttatttccatcatgtgctct-accattagcagatt-acaaagagttcacttatatgccttgctc--ctatttcatag-----------------------------------------

upper sequence: Vv14s0030g01350.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os12g06810.4 (Oryza sativa), 5'ss of exon 11
GTTCCTGTTCACAAGGAACCATCCTTTACCATTCCTGGAACCCCAGGAATTGTGCAGCATGAGATTCTAAATAATAGAAGGCATGTCTTGACTAAGgtaattacgatgcttcctcttattttacgataagataattattacttttacgatcaatttctaattcagatttgaatggttattttgttgaatgtgattttgcaaattgacactatacttctccacaatag
|| ||| | ||||| |||||||| |  |  |||||||||   |||| |||    ||||||||||| || ||||||||||| ||||| ||||| ||||| ||||| |   ||  |   ||  |  | |   |  ||||  |  || || |  | ||      |  |  |||      |||||  | |                                         
GTCCCTATACACAAAGAACCATCTTCAATTATTCCTGGAGTTCCAGCAATAACTCAGCATGAGATCCTGAATAATAGAAGACATGTATTGACGAAGgtgattacaagtgttatttccatcatgtgctct-accattagcagatt-acaaagagttcacttatatgccttgctc--ctatttcatag-----------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71881516|gb|DT030571.1|DT030571
EST:     GAATTGTGCAGCATGAGATTCTAAATAATAGAAGGCATGTCTTGACTAAN                         GATACAGCTGGCTCAGTAAAGCTATGGGAGATCACCAGAGGCATTGTTGTT
genomic: GAATTGTGCAGCATGAGATTCTAAATAATAGAAGGCATGTCTTGACTAAGgtaattacga ... tccacaatagGATACAGCTGGCTCAGTAAAGCTATGGGAGATCACCAGAGGCATTGTTGTT