1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GCACAGCCATAGCATCCTCTTTGATGGACAGGCAAGGAAGGAAAAGTCTTCTAATAACAAGCTTTGCTGGGATGgtactgttatttcctatataaaactatttattcctataaagttcttaaattggtacattcttagtatattccttatcggatcaagcaggtagcctgaatc...
species | Vitis vinifera |
transcript | Vv14s0006g02720.t01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TGGACAGGCAAGGAAGGAAAAGTCTTCTAATAACAAGCTTTGCTGGAATG GCTGCTTCAATGATGCTGCTTTCCTTCTCTTTCACTTGGAGTGCCCTGGCAEST: gi|110403571|gb|EC969185.1|EC969185
genomic: TGGACAGGCAAGGAAGGAAAAGTCTTCTAATAACAAGCTTTGCTGGGATGgtactgttat ... gcactgcaagGCTGCTTCAATGATGCTGCTTTCCTTCTCTTTCACTTGGAGTGCCCTGGCA
EST: TGGACAGGCAAGGAAGGAAAAGTCTTCTAATAACAAGCTTTGCTGGAATG GCTGCTTCAATGATGCTGCTTTCCTTCTCTTTCACTTGGAGTGCCCTGGCAEST: gi|30252112|gb|CB968751.1|CB968751
genomic: TGGACAGGCAAGGAAGGAAAAGTCTTCTAATAACAAGCTTTGCTGGGATGgtactgttat ... gcactgcaagGCTGCTTCAATGATGCTGCTTTCCTTCTCTTTCACTTGGAGTGCCCTGGCA
EST: TGGACAGGCAAGGAAGGAAAAGTCTTCTAATAACAAGCTTTGCTGGAATG GCTGCTTCAATGATGCTGCTTTCCTTCCCTTTCACTTGGAGTGCCCTGGCAEST: gi|110370956|gb|EC934605.1|EC934605
genomic: TGGACAGGCAAGGAAGGAAAAGTCTTCTAATAACAAGCTTTGCTGGGATGgtactgttat ... gcactgcaagGCTGCTTCAATGATGCTGCTTTCCTTCTCTTTCACTTGGAGTGCCCTGGCA
EST: TGGACAGGCAAGGAAGGAAAAGTCTTCTAATAACAAGCTTTGCTGGAATG GCTGCTTCAATGATGCTGCTTTCCTTCTCTTTCACTTGGAGTGCCCTGGCAEST: gi|110376760|gb|EC941834.1|EC941834
genomic: TGGACAGGCAAGGAAGGAAAAGTCTTCTAATAACAAGCTTTGCTGGGATGgtactgttat ... gcactgcaagGCTGCTTCAATGATGCTGCTTTCCTTCTCTTTCACTTGGAGTGCCCTGGCA
EST: TGGACAGGCAAGGAAGGAAAAGTCTTCTAATAACAAGCTTTGCTGGAATG GCTGCTTCAATGATGCTGCTTTCCTTCTCTTTCACTTGGAGTGCCCTGGCA
genomic: TGGACAGGCAAGGAAGGAAAAGTCTTCTAATAACAAGCTTTGCTGGGATGgtactgttat ... gcactgcaagGCTGCTTCAATGATGCTGCTTTCCTTCTCTTTCACTTGGAGTGCCCTGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACAGCCATAGCATCCTCTTTGATGGACAGGCAAGGAAGGAAAAGTCTTCTAATAACAAGCTTTGCTGGGATGgtactgttatttcctatataaaactatttattcctataaagttcttaaattggtacattcttagtatattccttatcggatcaagcaggtagcctgaatc
- - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tataaaa