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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAACTTTTCGCCTCAAATGACCGAGCCATTCGAGTTGGTCTCCTGCAGCATATTGATCAGTATGGGGAGTCATTATCTGCACAAATTGTTGATGAACAAgtatggtagtggtttctgaatgatttaatcaaattttagctgtccatgttttggacataagataatgcttgtatcttttcaccatcaatttggaaattctaaaatgcttggtgatgcttggcactag

Basic information

species Vitis vinifera
transcript Vv13s0067g03110.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g03110.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os01g60440.1 (Oryza sativa), 5'ss of exon 11
GAAACTTTTCGCCTCAAATGACCGAGCCATTCGAGTTGGTCTCCTGCAGCATATTGATCAGTATGGGGAGTCATTATCTGCACAAATTGTTGATGAACAAgtatggtagtggtttctgaatgatttaatcaaattttagctgtccatgttttggacataagataatgcttgtatcttttcaccatcaatttggaaattctaaaatgcttggtgatgcttggcactag
||| ||||| ||||| ||||||||||| || |||||| | ||  ||||||| || ||||||| ||||||||||||  | || |||| ||||||||| |||||||| ||    || ||| |||     |||    | |   | ||     | | ||     || |       ||||| |    ||                                           
GAAGCTTTTTGCCTCTAATGACCGAGCTATCCGAGTTAGCCTTTTGCAGCACATAGATCAGTTTGGGGAGTCATTGACAGCTCAAACTGTTGATGAGCAAgtatgctatcatttcctgtatggac--atctgcatgtg--tttctggaatgttgatgcttgacaggataaatatctctaatgcag------------------------------------------

upper sequence: Vv13s0067g03110.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G098078_T02 (Zea mays), 5'ss of exon 11
GAAACTTTTCGCCTCAAATGACCGAGCCATTCGAGTTGGTCTCCTGCAGCATATTGATCAGTATGGGGAGTCATTATCTGCACAAATTGTTGATGAACAAgtatggta-gtggtttctgaatgatttaatcaaattttagctgt-ccatgttttggacataagataatgcttgtatcttttcaccatcaatttggaaattctaaaatgcttggtgatgcttggcactag
 || ||||| ||||| ||||||||||| || ||||   ||||  |||| || || ||||||| |||||| ||| | ||||| |||| ||||||||||||||||||  |  |  ||| || |  ||   |   |  | ||  ||| ||||    | | |   | | |||   | |||||  | | |  |  ||| |                                  
CAAGCTTTTTGCCTCCAATGACCGAGCTATCCGAGCATGTCTTTTGCACCACATAGATCAGTTTGGGGAATCAATGTCTGCTCAAACTGTTGATGAACAAgtatgtgatatactttgtggacaatcgtac--atctgtatttgttccataaaattgtctgcata-aatatatctatctaatgatctcccttttag----------------------------------

upper sequence: Vv13s0067g03110.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G098078_T04 (Zea mays), 5'ss of exon 11
GAAACTTTTCGCCTCAAATGACCGAGCCATTCGAGTTGGTCTCCTGCAGCATATTGATCAGTATGGGGAGTCATTATCTGCACAAATTGTTGATGAACAAgtatg-gtagtggtttctgaatgatttaatcaaattttagctgt-ccatgttttggacataagataatgcttgtatcttttcaccatcaatttggaaattctaaaatgcttggtgatgcttggcactag
 || ||||| ||||| ||||||||||| || ||||   ||||  |||| || || ||||||| |||||| ||| | ||||| |||| |||||||||||||||||| |   |  ||| || |  ||   |   |  | ||  ||| ||||    | | |   | | |||   | |||||  | | |  |  ||| |   ||     |||                     
CAAGCTTTTTGCCTCCAATGACCGAGCTATCCGAGCATGTCTTTTGCACCACATAGATCAGTTTGGGGAATCAATGTCTGCTCAAACTGTTGATGAACAAgtatgtgatatactttgtggacaatcgtac--atctgtatttgttccataaaattgtctgcata-aatatatctatctaatgatctcccttttaggtttttcctcatgtag------------------

upper sequence: Vv13s0067g03110.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA20G36180.1 (Glycine max), 5'ss of exon 11
GAAACTTTTCGCCTCAAATGACCGAGCCATTCGAGTTGGTCTCCTGCAGCATATTGATCAGTATGGGGAGTCATTATCTGCACAAATTGTTGATGAACAAgtatggtagtggtttctgaatgatttaatcaaattttagctgtccatgttttggacataagataatgcttgtatcttttcaccatcaatttggaaattctaaaatgcttggtgatgcttggcactag
 |||||||| || || ||||||||||| ||||||||||| || || || ||||||||||||| ||||||||||||||| |||||| |||||||||| || ||||| |  | |  |  || || ||||||    | ||| ||     | |        |   | |||    | |  ||    |  |||||  | | ||| |  | |  ||| |||| | |   |  ||
TAAACTTTTTGCATCCAATGACCGAGCTATTCGAGTTGGCCTTCTTCAACATATTGATCAGTTTGGGGAGTCATTATCAGCACAAGTTGTTGATGAGCAGgtatgttgtttggataagattg-tttaatt---tcttatcttattttttcccctttgtggtaaaatatacggagattcatgctgtcaatgagaatatttttcatttattgttgatacatatgatcag

upper sequence: Vv13s0067g03110.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA18G47590.1 (Glycine max), 5'ss of exon 11
GAAACTTTTCGCCTCAAATGACCGAGCCATTCGAGTTGGTCTCCTGCAGCATATTGATCAGTATGGGGAGTCATTATCTGCACAAATTGTTGATGAACAAgtatggtagtggtttctgaatgatttaatcaaattttagctgtccatgttttggacataagataatgcttgtatcttttcaccatcaatttggaaattctaaaatgcttggtgatgcttggcactag
 ||||| || ||||| ||||| ||||| || |||||||  || || || ||||||||||| ||||| ||||| ||||| || |||  ||||||||||||||||||       |||||  |   |||  |    | ||  |  | | | ||||| |||  | |||        |  ||        |||| |||| | | | |||| ||| |                
AAAACTCTTTGCCTCCAATGATCGAGCTATACGAGTTGCCCTTCTTCAACATATTGATCAATATGGAGAGTCTTTATCAGCGCAAGCTGTTGATGAACAAgtatgcattcaatttctctacttttttttttgttcttgacaattcct-ttttgtacaatatata-----caaacattcatgttgacaatgtggatactttgaaattcttag----------------

upper sequence: Vv13s0067g03110.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA09G38740.1 (Glycine max), 5'ss of exon 11
GAAACTTTTCGCCTCAAATGACCGAGCCATTCGAGTTGGTCTCCTGCAGCATATTGATCAGTATGGGGAGTCATTATCTGCACAAATTGTTGATGAACAAgtatggtagtggtttctgaatgatttaatcaaattttagctgtccatgttttggacataagataatgcttgtatcttttcaccatcaatttggaaattctaaaatgcttggtgatgcttggcactag
 ||||| || ||||| ||||| ||||| || |||||||  || || || ||||||||||| ||||| ||||| ||||| || |||  ||||||||| ||||||||     | |||||  |   |||  |    | ||  |  | | | ||||| |||  | ||| |      |  ||        |||| |||| | | | |||| ||| |                
AAAACTCTTTGCCTCCAATGATCGAGCTATACGAGTTGCCCTTCTTCAACATATTGATCAATATGGAGAGTCGTTATCAGCGCAAGCTGTTGATGAGCAAgtatgcacccgatttctctacttttttttttgttcttgacaattcct-ttttgtacaatatatacta-----acattcatgttggcaatgtggatactttgaaattcttag----------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110685984|gb|EE063184.1|EE063184
EST:     TTGATCAGTATGGGGAGTCATTATCTGCACAAATTGTTGATGAACAA                         GTTTATACTCATGTTGCTACTGGGTTCTCAGACACGTCTGCTTTTCTTCGG
genomic: TTGATCAGTATGGGGAGTCATTATCTGCACAAATTGTTGATGAACAAgtatggtagt ... ttggcactagGTTTATACTCATGTTGCTACTGGGTTCTCAGACACGTCTGCTTTTCTTCGG