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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCCAGATGGTTCACTATTAGATATCATGCGGAATGCTTATGATCTTCTTTCTCAATGTGATATAAAAATGCCTGAGgtatttcatcataaatctcccccaggattgatatcaaaatttctcccttttggaagtggatatgactgctgattatatcttgctttcaactttgtttgtgtaatatttatttacttagtttatgtttgcaaagcctcatttttgttggcttttctgttgaagcaatgttctggtgttctgttgcatcataatctgcag

Basic information

species Vitis vinifera
transcript Vv13s0067g01470.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g01470.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA18G02900.1 (Glycine max), 5'ss of exon 11
ACTCCAGATGGTTCACTATTAGATATCATGCGGAATGCTTATGATCTTCTTTCTCAATGTGATATAAAAATGCCTGAGgtatttcatcataaatctcccccaggattgatat-caaaatttctcccttttggaagtggatatgactgctgattatatcttgctttcaactttgtttgtgtaatatttatttacttagtttatgtttgcaaagcctcatttttgttggcttttctgttgaagcaatgttctggtgttctgttgcatcataatctgcag
|| || |||||  | |||||||||||| | || |||||| ||||||||||||| ||||||||||||| | | |||||||||| |    ||  || ||      | || ||    |    ||     |  ||    ||| |  |  |  |  | ||||  | ||    | |||| || |   |  |   || | ||| ||||||||  |     |||  |  ||  |                                                   
ACACCTGATGGCGCTCTATTAGATATCTTACGAAATGCTCATGATCTTCTTTCACAATGTGATATAAGACTTCCTGAGgtatat----atgtat-tctaatgtgttttatgcatattgatttgttttcatgtggttgggttgggttcattttcatattatact----agtttgcttattctaggtactttcaattattttatgtt-acgctttctctctcctgcag---------------------------------------------------

upper sequence: Vv13s0067g01470.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA11G35520.1 (Glycine max), 5'ss of exon 12
ACTCCAGATGGTTCACTATTAGATATCATGCGGAATGCTTATGATCTTCTTTCTCAATGTGATATAAAAATGCCTGAGgtatttcatcataaatctcccccaggattgatatcaaaatttctcccttttggaagtggatatgactgctgattatatcttgctttcaactttgtttgtgtaatatttatttacttagtttatgtttgcaaagcctcatttttgttggcttttctgttgaagcaatgttctggtgttctgttgcatcataatctgcag
|| || |||||| | || || |||||| | || |||||| ||||||||||||| ||||||||||||| | | |||||||||| |    ||  || |      |  ||  |||  | |||  | | ||||        || ||  ||  ||||   |     ||   | | |  | ||   ||  ||||     |                                                                                  
ACACCTGATGGTGCTCTGTTGGATATCTTACGAAATGCTCATGATCTTCTTTCACAATGTGATATAAGACTTCCTGAGgtatat----atgtattttaatgtgtgttt-tatgcatattgattcattttc-------atctggttg--gattgggttcaatttcatattatactagt---atgcttatgcgactg---------------------------------------------------------------------------------