Sequence
atgc intronic sequence ATGC exonic sequenceTTTATCGCGGCGACCCAACCAATCAATTGCTTAGCCTTTGTTTTCGATGGAGTGAACTTTGGAGCATCGGATTTTGCATATACTGCATACTCCATGgcaagtgcccaccacagaaaatgcttgtatcaattcttgtaacttaatgtttaattctcaattccagtttgatgacaaattattccttgtgggtgatcctcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0064g00930.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA09G15550.1 (Glycine max), 5'ss of exon 11
TTTATCGCGGCGACCCAACCAATCAATTGCTTAGCCTTTGTTTTCGATGGAGTGAACTTTGGAGCATCGGATTTTGCATATACTGCATACTCCATGgcaagtgcccaccacagaaaatgcttgtatcaattcttgtaacttaatgtttaattctcaattccagtttgatgacaaattattccttgtgggtgatcctcag
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TTTGTTGCTGCCACACAACCAATCAATTCATTAGCCTTTGTCTTTGATGGTGTGAACTATGGGGCATCTGATTTTGCATATTCTGCATACTCCTTGgtaagttctc-tcatacaata-acttttattaaa----aaaaagtattcgtca--tctctatcaaatttatttagcaaatttctatgctcataatttgttcag
upper sequence: Vv13s0064g00930.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA13G27300.1 (Glycine max), 5'ss of exon 12
TTTATCGCGGCGACCCAACCAATCAATTGCTTAGCCTTTGTTTTCGATGGAGTGAACTTTGGAGCATCGGATTTTGCATATACTGCATACTCCATGgcaagtgcccaccacagaaaatgcttgtatcaattcttgtaacttaatgtttaattctcaattccagtttgatgacaaattattccttgtgggtgatcctcag
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TTTGTGGCTGCTACTCAACCAATCAATTCATTAGCCTTTGTATTTGATGGAGTGAACTATGGAGCTTCTGATTTTGCATATTCAGCATACTCTCTGGCAAgttcacatgccttt---ttttcgtcctttttatcatatttaattatccaaatttaattatcagtttaattttgactaatttcttttgcag---------
upper sequence: Vv13s0064g00930.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA12G36620.1 (Glycine max), 5'ss of exon 13
TTTATCGCGGCGACCCAACCAATCAATTGCTTAGCCTTTGTTTTCGATGGAGTGAACTTTGGAGCATCGGATTTTGCATATACTGCATACTCCATGgcaagtgcccac----cacagaaaatgcttgtatcaattcttgtaacttaatgtttaa--ttctcaattccagtttgatgacaaattattccttgtgggtgatcctcag
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TTTGTGGCTGCTACTCAACCAATCAATTCATTAGCCTTTGTATTTGATGGAGTGAACTATGGTGCTTCTGATTTTGCATATTCAGCATACTCTCTGGCAAgttcacacatgcccttcttttcatttatgatatttttcatctttaattatccaaatttatcgatttaattttggttactttct-ttctttgcag-----------
upper sequence: Vv13s0064g00930.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA12G36610.1 (Glycine max), 5'ss of exon 10
TTTATCGCGGCGACCCAACCAATCAATTGCTTAGCCTTTGTTTTCGATGGAGTGAACTTTGGAGCATCGGATTTTGCATATACTGCATACTCCATGgcaagtgcccaccacagaaaatgcttgtatcaattcttgtaacttaatgtttaattctcaattccagtttgatgacaaattattccttgtgggtgatcctcag
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--------AGCTACTCAACCAATCAATTCATTGGCCTTTGTCTTTGATGGTGTCAACTATGGGGCATCCGATTTTGCATATTCTGCCTATTCTTTGGCAAGTTTGCA----------Tgtcctttttcacccttttcatactatatcc---tccttaccaaaatttatttagtaatttttccctaatctctttgtttag
upper sequence: Vv13s0064g00930.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT3G08040.1 (Arabidopsis thaliana), 5'ss of exon 10
TTTATCGCGGCGACCCAACCAATCAATTGCTTAGCCTTTGTTTTCGATGGAGTGAACTTTGGAGCATCGGATTTTGCATATACTGCATACTCCATGgcaagtgcccaccacagaaaatgcttgtatcaattcttgtaacttaatgtttaattctcaattccagtttgatgacaaattattccttgtgggtgatcctcag--------
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TTTATAGCAGCAACGCAGCCAATAAACTCTCTCGCCTTTGTATTGGATGGAGTCAATTTTGGAGCATCTGATTTTGCTTACACTGCATACTCCATGgtatgcacactatatatactatgaaatgattaaaattcctttttttttttttgaaat--gacttaaactttgtctatctttttttcttgtaatccaattatgataaatcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|111283822|gb|EE296911.1|EE296911EST: ATGGAGTGAACTTTGGAGCATCGGATTTTGCATATACTGCATACTCCATG ATTTTGGTGTCCATACTGAGTATTGCATCCTTGTTCTACCTCTCTAAAACA
genomic: ATGGAGTGAACTTTGGAGCATCGGATTTTGCATATACTGCATACTCCATGgcaagtgccc ... tgatcctcagATTTTGGTGTCCATACTGAGTATTGCATCCTTGTTCTACCTCTCTAAAACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTATCGCGGCGACCCAACCAATCAATTGCTTAGCCTTTGTTTTCGATGGAGTGAACTTTGGAGCATCGGATTTTGCATATACTGCATACTCCATGgcaagtgcccaccacagaaaatgcttgtatcaattcttgtaacttaatgtttaattctcaattccagtttgatgacaaattattccttgtgggtgatcctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA