1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCACCCCTAGTTGATGTGGAGATCAGAGGTGTTCCAGCACTTCAATTTATGGGGGACATAGTTTGGAAATGAAGATCTGCTTACTGACATTTATGATTGGgtaaacttttctttaactcttaaactaataagtttcttcagctcttgagactgactgattgttttttggcacattgataaaatggacctttatgttgtca...
species | Vitis vinifera |
transcript | Vv13s0019g04590.t01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GGGGGACATAGTTTGGAAATGAAGATCTGCTTACTGACATTTATGATTGG GTATTAAATACTGTCTTTGGCTAATTGTTGCATGCAAGCATAGCAGTCACAEST: gi|27578838|gb|CB001533.1|CB001533
genomic: GGGGGACATAGTTTGGAAATGAAGATCTGCTTACTGACATTTATGATTGGgtaaactttt ... agtgtaccagGTATTAAATACTGTCTTTGGCTAATTGTTGCATGCAAGCATAGCAGTCACA
EST: GGGGGACATAGTTTGGAAATGAAGATCTGCTTACTGACATTTATGATTGG GTATTAAATACTGTCTTTGGCTAATTGTTGCATGCAAGCATAGCAGTCACAEST: gi|110422535|gb|EC988861.1|EC988861
genomic: GGGGGACATAGTTTGGAAATGAAGATCTGCTTACTGACATTTATGATTGGgtaaactttt ... agtgtaccagGTATTAAATACTGTCTTTGGCTAATTGTTGCATGCAAGCATAGCAGTCACA
EST: GGGGGACATAGTTTGGAAATGAAGATCTGCTTACTGACATTTATGATTGG GTATTAAATACTGTCTTTGGCTAATTGTTGCATGCAAGCATAGCAGTCACAEST: gi|30328715|gb|CD011977.1|CD011977
genomic: GGGGGACATAGTTTGGAAATGAAGATCTGCTTACTGACATTTATGATTGGgtaaactttt ... agtgtaccagGTATTAAATACTGTCTTTGGCTAATTGTTGCATGCAAGCATAGCAGTCACA
EST: GGGGGACATAGTTTGGAAATGAAGATCTGCTTACTGACATTTATGATTGG GTATTAAATACTGTCTTTGGCTAATTGTTGCATGCAAGCATAGCAGTCACAEST: gi|32267735|gb|CD716698.1|CD716698
genomic: GGGGGACATAGTTTGGAAATGAAGATCTGCTTACTGACATTTATGATTGGgtaaactttt ... agtgtaccagGTATTAAATACTGTCTTTGGCTAATTGTTGCATGCAAGCATAGCAGTCACA
EST: GGGGGACATAGTTTGGAAATGAAGATCTGCTTACTGACATTTATGATTGG GTATTAAATACTGTCTTTGGCTAATTGTTGCATGCAAGCATAGCAGTCACAEST: gi|349822994|gb|FQ399973.1|FQ399973
genomic: GGGGGACATAGTTTGGAAATGAAGATCTGCTTACTGACATTTATGATTGGgtaaactttt ... agtgtaccagGTATTAAATACTGTCTTTGGCTAATTGTTGCATGCAAGCATAGCAGTCACA
EST: GGGGGACATAGTTTGGAAATGAAGATCTGCTTACTGACATTTATGATTGG GTATTAAATACTGTCTTTGGCTAATTGTTGCATGCAAGCATAGCAGTCACAEST: gi|46909628|gb|CN545173.1|CN545173
genomic: GGGGGACATAGTTTGGAAATGAAGATCTGCTTACTGACATTTATGATTGGgtaaactttt ... agtgtaccagGTATTAAATACTGTCTTTGGCTAATTGTTGCATGCAAGCATAGCAGTCACA
EST: GGGGGACATAGTTTGGAAATGAAGATCTGCTTACTGACATTTATGATTGG GTATTAAATACTGTCTTTGGCTAGTTGTTGCATGCAAGCATAGCAGTCACA
genomic: GGGGGACATAGTTTGGAAATGAAGATCTGCTTACTGACATTTATGATTGGgtaaactttt ... agtgtaccagGTATTAAATACTGTCTTTGGCTAATTGTTGCATGCAAGCATAGCAGTCACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACCCCTAGTTGATGTGGAGATCAGAGGTGTTCCAGCACTTCAATTTATGGGGGACATAGTTTGGAAATGAAGATCTGCTTACTGACATTTATGATTGGgtaaacttttctttaactcttaaactaataagtttcttcagctcttgagactgactgattgttttttggcacattgataaaatggacctttatgttgtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gataaaa