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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTGCTGCTGTGGATTCCACTGGTCGTGAGTTAAATAGGAATCGTCTGATTGCTTTAATGTCCGCCATTGTTCTTGAGAAAgtatggtcttccttattcagttatgttcagagctgttgtttataagtccaacttttgtctggatagtatatttaatttgttcttcttgttttctttccatag

Basic information

species Vitis vinifera
transcript Vv13s0019g04370.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g04370.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA20G32030.1 (Glycine max), 5'ss of exon 10
ATCTGCTGCTGTGGATTCCACTGGTCGTGAGTTAAATAGGAATCGTCTGATTGCTTTAATGTCCGCCATTGTTCTTGAGAAAgtatggtcttccttattcagttatgttcagagctgttgtttataagtccaacttttgtctggatagtatatttaatttgttcttcttgtttt-ctttccatag
||||||||||||||||| |||||| ||||| || || ||||||||| | ||||| |||||| | || |||||||||||| ||||  || ||   || ||  | |||  ||||| ||   ||||   |  |  |   || |||| ||| | | | | | || || | ||  | ||  |||||||||
ATCTGCTGCTGTGGATTTCACTGGCCGTGAATTCAACAGGAATCGTTTAATTGCCTTAATGGCAGCTATTGTTCTTGAGGAAgtgagg-ctcattttttgggctat-ctcagaccta--gttttctaacctcatacttctctgtatactttctcttaattcttttcctcctcttgttttccatag

upper sequence: Vv13s0019g04370.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA10G35490.2 (Glycine max), 5'ss of exon 10
ATCTGCTGCTGTGGATTCCACTGGTCGTGAGTTAAATAGGAATCGTCTGATTGCTTTAATGTCCGCCATTGTTCTTGAGAAAgtatggtcttccttattcagttatgttcagagctgttgtttataagtccaacttttgtctggatagtatatttaatttgttcttcttgtttt-ctttccatag
||||||||||||||||| |||||| ||||| || || ||||||||| | ||||| |||||| | || |||||||||||| ||||  || ||   || || || |||  ||||| ||   |||||     |  |   || |||| ||| |   | | | || || | ||  | ||  |||||||||
ATCTGCTGCTGTGGATTTCACTGGCCGTGAATTCAACAGGAATCGTTTAATTGCCTTAATGGCAGCTATTGTTCTTGAGGAAgtgagg-ctcatttttttagctat-ctcagaccta--gttta---acctcatacttctctgtatacttcctcttaattcttttcctcctcttgttttccatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71862630|gb|DT011685.1|DT011685
EST:     TAAATAGGAATCGTCTGATTGCTTTAATGTCTGCCATTGTTCTTGAGAAA                         CATCCAGGAACAACCATA
genomic: TAAATAGGAATCGTCTGATTGCTTTAATGTCCGCCATTGTTCTTGAGAAAgtatggtctt ... ctttccatagCATCCAGGAACAACCATA
EST: gi|30128717|gb|CB914056.1|CB914056
EST:     TAAATAGGAATCGTCTGATTGCTTTAATGTCCGCCATTGTTCTTGAGGAA                         CATCCAGGAACAACCATAGTCACAGATAGTGTAACTTCAGATGGCCTGACT
genomic: TAAATAGGAATCGTCTGATTGCTTTAATGTCCGCCATTGTTCTTGAGAAAgtatggtctt ... ctttccatagCATCCAGGAACAACCATAGTCACGGATAGTGTAACTTCAGATGGCCTGACT
EST: gi|30137604|gb|CB922942.1|CB922942
EST:     TAAATAGGAATCGTCTGATTGCTTTAATGTCCGCCATTGTTCTTGAGGAA                         CATCCAGGAACAACCATAGTCACAGATAGTGTAACTTCAGATGGCCTGACT
genomic: TAAATAGGAATCGTCTGATTGCTTTAATGTCCGCCATTGTTCTTGAGAAAgtatggtctt ... ctttccatagCATCCAGGAACAACCATAGTCACGGATAGTGTAACTTCAGATGGCCTGACT
EST: gi|30128985|gb|CB914324.1|CB914324
EST:     TAAATAGGAATCGTCTGATTGCTTTAATGTCCGCCATTGTTCTTGAGGAA                         CATCCAGGAACAACCATAGTCACAGATAGTGTAACTTCAGATGGCCTGACT
genomic: TAAATAGGAATCGTCTGATTGCTTTAATGTCCGCCATTGTTCTTGAGAAAgtatggtctt ... ctttccatagCATCCAGGAACAACCATAGTCACGGATAGTGTAACTTCAGATGGCCTGACT