1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ACTGATGGGTTCCCTACAATTCTTTTCTTCCCGGCTGGGAATAAGAGCTTTGATCCGgttagtggaattcatttctccaatttgtcacttttgtggatactgtttaaattcccatcattcttgtctagttaactcaggtatcagtatcacccatgccctctagcattacttgattttcttatctgatatttgatttttgggttctgcag
species | Vitis vinifera |
transcript | Vv13s0019g04240.t01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GGTTCCCTACAATTCTTTTCTTCCCGGCTGGGAATAAGAGCTTTGATCCG ATCACTTTTGATGGTGACCGTACTTTGGGTGGCATTCTATAAGTTCCTEST: gi|27583023|gb|CB005718.1|CB005718
genomic: GGTTCCCTACAATTCTTTTCTTCCCGGCTGGGAATAAGAGCTTTGATCCGgttagtggaa ... ggttctgcagATCACTTTTGATGGTGACCGTACTTTGG-TGGCATTCTATAAGTTCCT
EST: GGTTCCCTACAATTCTTTTCTTCCCGGCTGGGAATAAGAGCTTTGATCCG ATCACTTTTGATGGTGACCGTACTTTGGTGGCATTCTATAAGTTCCTTAAGEST: gi|110363806|gb|EC927425.1|EC927425
genomic: GGTTCCCTACAATTCTTTTCTTCCCGGCTGGGAATAAGAGCTTTGATCCGgttagtggaa ... ggttctgcagATCACTTTTGATGGTGACCGTACTTTGGTGGCATTCTATAAGTTCCTTAAG
EST: GGTTCCCTACAATTCTTTTCTTCCCGGCTGGGAATAAGAGCTTTGATCCG ATCACTTTTGATGGTGACCGTACTTTGGTGGCATTCTATAAGTTCCTTAAGEST: gi|110370783|gb|EC932930.1|EC932930
genomic: GGTTCCCTACAATTCTTTTCTTCCCGGCTGGGAATAAGAGCTTTGATCCGgttagtggaa ... ggttctgcagATCACTTTTGATGGTGACCGTACTTTGGTGGCATTCTATAAGTTCCTTAAG
EST: GGTTCCCTACAATTCTTTTCTTCCCGGCTGGGAATAAGAGCTTTGATCCG ATCACTTTTGATGGTGACCGTACTTTGGTGGCATTCTATAAGTTCCTCAAGEST: gi|352764376|gb|FQ471343.1|FQ471343
genomic: GGTTCCCTACAATTCTTTTCTTCCCGGCTGGGAATAAGAGCTTTGATCCGgttagtggaa ... ggttctgcagATCACTTTTGATGGTGACCGTACTTTGGTGGCATTCTATAAGTTCCTTAAG
EST: GGTTCCCTACAATTCTTTTCTTCCCGGCTGGGAATAAGAGCTTTGATCCG ATCACTTTTGATGGTGACCGTACTTTGGTGGCATTCTATAAGTTCCTTAAGEST: gi|352772626|gb|FQ472101.1|FQ472101
genomic: GGTTCCCTACAATTCTTTTCTTCCCGGCTGGGAATAAGAGCTTTGATCCGgttagtggaa ... ggttctgcagATCACTTTTGATGGTGACCGTACTTTGGTGGCATTCTATAAGTTCCTTAAG
EST: GGTTCCCTACATTTCTTTTCTTCCCGGCTGGGAATAAGAGCTTTGATCCG ATCACTTTTGATGGTGACCGTACTTTGGTGGCATTCTATAAGTTCCTTAAG
genomic: GGTTCCCTACAATTCTTTTCTTCCCGGCTGGGAATAAGAGCTTTGATCCGgttagtggaa ... ggttctgcagATCACTTTTGATGGTGACCGTACTTTGGTGGCATTCTATAAGTTCCTTAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTGATGGGTTCCCTACAATTCTTTTCTTCCCGGCTGGGAATAAGAGCTTTGATCCGgttagtggaattcatttctccaatttgtcacttttgtggatactgtttaaattcccatcattcttgtctagttaactcaggtatcagtatcacccatgccctctagcattacttgattttcttatctgatatttgatttttgggttctgcag
- - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - GAGCTT