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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCTTGAATGTTCTTTATCACAATTGCCCTTCTCAGAGAACATTAATAATCACTCATTCAAATCAGGCTTTGAATGATCTTTTTGAGAAGATAATGCAGgtatgaggcatgaagtttaattacttgaatatgatattgtttttttttacaattgaagaagaaacttttaatgctcctccagttacaatcaagttcctgaagcatttatatgtttactatgtcag

Basic information

species Vitis vinifera
transcript Vv13s0019g00880.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g00880.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os03g26960.1 (Oryza sativa), 5'ss of exon 12
GATCTTGAATGTTCTTTATCACAATTGCCCTTCTCAGAGAACATTAATAATCACTCATTCAAATCAGGCTTTGAATGATCTTTTTGAGAAGATAATGCAGgtatgaggcatgaagtttaattacttgaatatgatattgtttttttttacaatt---gaagaagaaacttttaatgctcc-tccagttacaatcaagttcctgaagcatttatatgtttactatgtcag
||| ||||||||| | |||||||| || ||||| || |||||  |||| || |||||||| ||||| |||||||||||| | |||||||||||||||||||||       || |    |||||||    | | |     | ||  | ||   ||   ||   |||||  ||  ||  |   |||  |   |  | || |                              
GATATTGAATGTTTTATATCACAACTGTCCTTCCCAAAGAACTCTAATTATAACTCATTCCAATCAAGCTTTGAATGATTTGTTTGAGAAGATAATGCAGgtactgtaactgca--ccaattactcctgttttactccttattaatctattctttatgagagagaaatattgcatatttgatcccatgctatgccagctatc---------------------------

upper sequence: Vv13s0019g00880.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G410479_T01 (Zea mays), 5'ss of exon 13
GATCTTGAATGTTCTTTATCACAATTGCCCTTCTCAGAGAACATTAATAATCACTCATTCAAATCAGGCTTTGAATGATCTTTTTGAGAAGATAATGCAGgtatgaggcatgaagttta-attacttgaatatgatattgtttttttttacaattgaagaagaaacttttaatgctcctccagttacaatcaagttcctgaagcatttatatgtttactatgtcag
||| || |||||||| |||||||| || ||||| || |||||| | || || || || || |||||||||||||||||| | |||||||||||||||||||||  |    ||     || || |  ||||  |       | ||   |||||   | |        ||| ||      |   ||  ||||   || |   |     ||                  
GATATTAAATGTTCTATATCACAACTGTCCTTCACAAAGAACACTGATTATAACCCACTCCAATCAGGCTTTGAATGATTTATTTGAGAAGATAATGCAGgtaccatttttgtgccatatatgatctgaacttacc----tcttaccttacatccgcacc-----ttttcaagatatatggtgtatcaatgctgtgctgtacattattg-----------------

upper sequence: Vv13s0019g00880.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA0048S00340.1 (Glycine max), 5'ss of exon 11
GATCTTGAATGTTCTTTATCACAATTGCCCTTCTCAGAGAACATTAATAATCACTCATTCAAATCAGGCTTTGAATGATCTTTTTGAGAAGATAATGCAGgtatgaggcatgaagtttaattacttgaatatgatattgtttttttttacaattgaagaagaaacttttaatgctcctccagttacaatcaagttcctgaagcatttatatgtttactatgtcag
 ||  | ||||||||||| || ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||| | | |      ||| |||  |   ||||  |    | ||  |||   |||      |||  ||| | |  |  |  |||   | | ||  ||||    |||      || | | |||    
AATTCTAAATGTTCTTTACCATAATTGTCCTTCTCAGAGAACCTTAATAATTACTCATTCAAATCAGGCTTTGAATGACCTGTTTGAGAAGATAATGCAGgta-gggtc------ttttatttttcctatattcttacatgttgctttgtgatttt----gaagttttgattattttt--agt---agttaatgtcctagtacatg-----gtgtgcaatg----

upper sequence: Vv13s0019g00880.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA20G00260.1 (Glycine max), 5'ss of exon 11
GATCTTGAATGTTCTTTATCACAATTGCCCTTCTCAGAGAACATTAATAATCACTCATTCAAATCAGGCTTTGAATGATCTTTTTGAGAAGATAATGCAGgtatgaggcatgaagtttaattacttgaatatgatattgtttttttttacaattgaagaagaaacttttaatgctcctccagttacaatcaagttcctgaagcatttatatgtttactatgtcag
 ||  | |||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| || || ||||||||||||||||||   ||  |    | |   | ||  | | | | || |||  ||| |    ||||||       |||| ||  |  |    |   | | ||  ||||    ||||  || ||            
AATTCTAAATGTTCTTTATCATAATTGTCCTTCTCAGAGAACCTTAATAATTACTCATTCAAATCAGGCTTTGAATGACCTGTTCGAGAAGATAATGCAGgta--gggtcttttatctg--tcctctattcttacat-gttgctttgtgattttgaag-------ttttgattatttt----tagtagttaatgtcctagtacattactaagtgct---------

upper sequence: Vv13s0019g00880.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT2G38770.1 (Arabidopsis thaliana), 5'ss of exon 11
GATCTTGAATGTTCTTTATCACAATTGCCCTTCTCAGAGAACATTAATAATCACTCATTCAAATCAGGCTTTGAATGATCTTTTTGAGAAGATAATGCAGgtatga--ggcatga-----agtttaattacttgaatatgatattgttt--ttttttacaattgaagaagaaacttttaatgctcctccagttacaatcaagttcctgaagcatttatatgtttactatgtcag
 || ||||||||||| || ||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |  |||||         |||  ||| ||  ||    |  | |||  | |||||   |||| | ||    || | |   ||     | ||||   |  ||  |  ||                       
AATTTTGAATGTTCTATACCACAACTGTCCTTCTCAGAGGACATTGATAATCACTCATTCAAATCAGGCTTTGAATGATCTTTTTGAGAAGATAATGGAGgtactattggcatcttcgttgcttttgttatttatatggagtcatatttaatgttttatgtttgacggag----ttctgagagtcaaat-gctacatggatcttttttcag-----------------------