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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAGgttattatacgaatcctttatcacataacaatagggactatggtgcttagacccaatttcgaggcatatggaaaatactttattgctattcctgaccctggttcttaaatttcttaactatag

Basic information

species Vitis vinifera
transcript Vv13s0019g00840.t01
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30130365|gb|CB915704.1|CB915704
EST:     TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAG                         GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
genomic: TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAGgttattatac ... ttaactatagGTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
EST: gi|110699424|gb|EE076409.1|EE076409
EST:     TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAG                         GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
genomic: TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAGgttattatac ... ttaactatagGTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
EST: gi|27582078|gb|CB004773.1|CB004773
EST:     TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAG                         GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
genomic: TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAGgttattatac ... ttaactatagGTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
EST: gi|77577354|gb|DV217389.1|DV217389
EST:     TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAG                         GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
genomic: TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAGgttattatac ... ttaactatagGTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
EST: gi|30132964|gb|CB918303.1|CB918303
EST:     TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAG                         GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
genomic: TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAGgttattatac ... ttaactatagGTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
EST: gi|33410540|gb|CF216167.1|CF216167
EST:     TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAG                         GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
genomic: TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAGgttattatac ... ttaactatagGTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
EST: gi|30303799|gb|CB980593.1|CB980593
EST:     TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAG                         GTGAATTTACAATGCTCGAACTTGCTGAGCCAGTGAAGGAG
genomic: TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAGgttattatac ... ttaactatagGTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
EST: gi|110690502|gb|EE067657.1|EE067657
EST:     TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAG                         GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
genomic: TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAGgttattatac ... ttaactatagGTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
EST: gi|110715292|gb|EE093173.1|EE093173
EST:     TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAG                         GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
genomic: TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAGgttattatac ... ttaactatagGTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
EST: gi|22012135|gb|BQ797169.1|BQ797169
EST:     TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAG                         GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
genomic: TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAGgttattatac ... ttaactatagGTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
EST: gi|156736486|gb|EV240607.1|EV240607
EST:     TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAG                         GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
genomic: TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAGgttattatac ... ttaactatagGTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
EST: gi|22010393|gb|BQ795427.1|BQ795427
EST:     TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAG                         GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
genomic: TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAGgttattatac ... ttaactatagGTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
EST: gi|110361965|gb|EC925471.1|EC925471
EST:     TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAG                         GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
genomic: TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAGgttattatac ... ttaactatagGTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
EST: gi|110359526|gb|EC921159.1|EC921159
EST:     TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAG                         GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
genomic: TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAGgttattatac ... ttaactatagGTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
EST: gi|32245507|gb|CD711326.1|CD711326
EST:     TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATTGGGAATCCAG                         GTGAATTTACAATGCTTGAACTTGCTGAGACAGTGAAGGAG
genomic: TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAGgttattatac ... ttaactatagGTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
EST: gi|27583335|gb|CB006030.1|CB006030
EST:     TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAG                         GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
genomic: TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAGgttattatac ... ttaactatagGTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
EST: gi|71873572|gb|DT022627.1|DT022627
EST:     TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAG                         GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
genomic: TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAGgttattatac ... ttaactatagGTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
EST: gi|110694959|gb|EE072432.1|EE072432
EST:     TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAG                         GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
genomic: TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAGgttattatac ... ttaactatagGTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
EST: gi|110369469|gb|EC933629.1|EC933629
EST:     TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAG                         GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
genomic: TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAGgttattatac ... ttaactatagGTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
EST: gi|30132893|gb|CB918232.1|CB918232
EST:     TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCTGGAATCCAG                         GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
genomic: TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAGgttattatac ... ttaactatagGTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
EST: gi|30303733|gb|CB980527.1|CB980527
EST:     TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAG                         GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
genomic: TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAGgttattatac ... ttaactatagGTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
EST: gi|110723312|gb|EE100478.1|EE100478
EST:     TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAG                         GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
genomic: TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAGgttattatac ... ttaactatagGTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
EST: gi|110720753|gb|EE096961.1|EE096961
EST:     TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAG                         GTGAATTTACNATGCTCGAACTTGCTGAAGACAGTGAAG
genomic: TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAGgttattatac ... ttaactatagGTGAATTTACAATGCTCGAACTTGCTGA-GACAGTGAAG
EST: gi|110714087|gb|EE090592.1|EE090592
EST:     TCGACTCATGGAAGGAGACNACACAGGCCCCATCAACATCGGGAATCCAG                         GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAA
genomic: TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAGgttattatac ... ttaactatagGTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
EST: gi|110721136|gb|EE097790.1|EE097790
EST:     TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAG                         GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
genomic: TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAGgttattatac ... ttaactatagGTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
EST: gi|110719051|gb|EE096588.1|EE096588
EST:     CGACTCATGGAAGGAGACAACACAGGTCCTNATCA-CATCGGGAATCCAG                         GTGAATTTACAATGCTCGAACTTGC
genomic: CGACTCATGGAAGGAGACAACACAGGCCCC-ATCAACATCGGGAATCCAGgttattatac ... ttaactatagGTGAATTTACAATGCTCGAACTTGC
EST: gi|110687991|gb|EE066031.1|EE066031
EST:     TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAG                         GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAANGAG
genomic: TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAGgttattatac ... ttaactatagGTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
EST: gi|110373757|gb|EC938084.1|EC938084
EST:     TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAG                         GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
genomic: TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAGgttattatac ... ttaactatagGTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
EST: gi|83275690|gb|DV939698.1|DV939698
EST:     TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAG                         GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
genomic: TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAGgttattatac ... ttaactatagGTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
EST: gi|110732601|gb|EE108029.1|EE108029
EST:     TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAG                         GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
genomic: TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAGgttattatac ... ttaactatagGTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
EST: gi|33408479|gb|CF214106.1|CF214106
EST:     TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAG                         GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
genomic: TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAGgttattatac ... ttaactatagGTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
EST: gi|32246001|gb|CD711820.1|CD711820
EST:     TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAG                         GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
genomic: TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAGgttattatac ... ttaactatagGTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
EST: gi|33410414|gb|CF216041.1|CF216041
EST:     TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAG                         GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
genomic: TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAGgttattatac ... ttaactatagGTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
EST: gi|110696154|gb|EE074987.1|EE074987
EST:     TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAG                         GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
genomic: TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAGgttattatac ... ttaactatagGTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
EST: gi|110360290|gb|EC923209.1|EC923209
EST:     TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAG                         GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
genomic: TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAGgttattatac ... ttaactatagGTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
EST: gi|71884738|gb|DT033793.1|DT033793
EST:     TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAG                         GTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG
genomic: TCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAGgttattatac ... ttaactatagGTGAATTTACAATGCTCGAACTTGCTGAGACAGTGAAGGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGATGGACTTGTTCGACTCATGGAAGGAGACAACACAGGCCCCATCAACATCGGGAATCCAGgttattatacgaatcctttatcacataacaatagggactatggtgcttagacccaatttcgaggcatatggaaaatactttattgctattcctgaccctggttcttaaatttcttaactatag

- - - - - - - - - - CATGGA
- - - - - - - - - - - TGGAAG
- - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - AGGAGA