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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTCTACCTTATTGGATTTGGATTGTTCTGCCTTGAATCACTGCTCAGTATCTGGGTTGTTCAGgttcagtagtctgatttctagttcttctgcttctatctccagcacttctactgcatcttggtttcttctaactctctttgttctcaatcccaatatgcag

Basic information

species Vitis vinifera
transcript Vv12s0059g01930.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0059g01930.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os07g37740.1 (Oryza sativa), 5'ss of exon 12
ATATTCTACCTTATTGGATTTGGATTGTTCTGCCTTGAATCACTGCTCAGTATCTGGGTTGTTCAGgttcagtagtctgatt----tctagttcttctgcttc-tatctccagcacttctactgcatcttggtttcttctaactctctttgt-tctcaatcccaatatgcag--------------------------------------------------------------------------------------------
|| |||||| || |||||||||||||||||||| | |||||| ||||||| ||||||||| | ||||| ||||  |  || |      || | | || | ||| |||    ||   |||||      |     ||| | ||  | |   |   |||  |      | |  ||                                                                                            
ATCTTCTACTTTGTTGGATTTGGATTGTTCTGCGTCGAATCATTGCTCAGCATCTGGGTTATCCAGgt-cagtcctgcgaataacaaatactccctccgtttcatattataagactttctagcattgcccatattcatatagatgttaataaatctagacatatgtgtctagaaagtcttataatataaaacggagaaagtatgtttttatgaaataaattctcaagtagtctatctgagccgttttgacatttgtgaatgcag

upper sequence: Vv12s0059g01930.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os01g57220.1 (Oryza sativa), 5'ss of exon 11
ATATTCTACCTTATTGGATTTGGATTGTTCTGCCTTGAATCACTGCTCAGTATCTGGGTTGTTCAGgttcagtagtctgatttctagttct--tctgcttctatctccagcacttctactgcatcttggtttcttctaactctctttgttctcaatcccaatatgcag
||||| ||| | |||||||||||| ||||||||||||||||||| |||||  |    ||  | |||||  |||  | | |    |  |  |   |     | |     | ||| | |  ||  | ||        ||   ||  | ||   |  |||   ||  |   
ATATTTTACTTCATTGGATTTGGACTGTTCTGCCTTGAATCACTACTCAGCGTTGTTGTCATCCAGgtg-agttttataaaacttgatcttagccaaagccaaatagtaacacct-tggtgtctgttcagcaacactccttcattctgccgttcatcatcatgcgtca

upper sequence: Vv12s0059g01930.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G169773_T01 (Zea mays), 5'ss of exon 10
ATATTCTACCTTATTGGATTTGGATTGTTCTGCCTTGAATCACTGCTCAGTATCTGGGTTGTTCAGgttcagtagtctgatttctagttcttctgcttcta----tct------ccagcacttctact-gcatcttggtttct---tctaactctctttgttctcaatcccaatatgcag---------------------------------------------------
||||| ||| | |||||||||||| ||||||||||||||||||||||||| |||   ||  |||||||   |||   || |||    || | |||   |||    |||         | |  |  | | ||| | |||| | |   ||| |  |    |  ||||  |   | | |  |                                                    
ATATTTTACTTCATTGGATTTGGAATGTTCTGCCTTGAATCACTGCTCAGCATCGTTGTCATTCAGgtg-ggtatcatgtttttaccttttgctgtccctagaattctgatgtgtagggatattcattagcaacatggtgtttctgtctcatgcatcataatctctctttaagtttcaattattctagaagagagctgttttgagatattattgttctgaacttgtttcag

upper sequence: Vv12s0059g01930.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G041181_T01 (Zea mays), 5'ss of exon 12
ATATTCTACCTTATTGGATTTGGATTGTTCTGCCTTGAATCACTGCTCAGTATCTGGGTTGTTCAGgttcagtagtctgatttctagttcttctgcttctatctccagcacttctactgcatcttggtttcttctaactctctttgttctcaatcccaatatgcag
||||||||| || ||||||||||| ||||||| || |||||| |||| || ||||||||  | ||||| ||||  ||| |||   |    ||||  || |    || | ||  | ||| ||   ||   |  |  | | || ||||  |    | |          
ATATTCTACTTTGTTGGATTTGGACTGTTCTGTCTGGAATCATTGCTTAGCATCTGGGTCATCCAGgt-cagttttct-attatcaaccgttctaatttt----cctgaac--caacttcagtgtgacatacttgagccctttttggaccgcgtgcag--------

upper sequence: Vv12s0059g01930.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G174730_T01 (Zea mays), 5'ss of exon 11
ATATTCTACCTTATTGGATTTGGATTGTTCTGCCTTGAATCACTGCTCAGTATCTGGGTTGTTCAGgttcagtagtctgatttctagttcttctgcttctatctccagcacttctactgcatcttggtttcttctaactctctttgttctcaatcccaatatgcag---------------------------------------------------------------------
||||| ||| |  |||||||||| |||||||||||||||||||| || || ||| | ||  ||||||||   |      |||  |  |||    | | ||   ||   |  ||  |  | |      |   |  | |  ||           |||  | | | ||                                                                      
ATATTTTACTTCGTTGGATTTGGCTTGTTCTGCCTTGAATCACTTCTGAGCATCGGTGTCATTCAGgttggttgaatctattctttcttcaatggatccttcatcatactgtttgagagaaaaaaaatccttcatcatactacaacccagggatcttattgtacattgttctctcaatttagtaaagtttttatgttcttcacgcctgatcattaagttctctctcaacttgcag

upper sequence: Vv12s0059g01930.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA12G32860.1 (Glycine max), 5'ss of exon 10
ATATTCTACCTTATTGGATTTGGATTGTTCTGCCTTGAATCACTGCTCAGTATCTGGGTTGTTCAGgttcagtagtctgatttctagttcttctgcttctatctccagcacttctactgcatcttggtttcttctaactctctttgttctcaatcccaatatgcag
||| ||||| ||||||| ||||| || |||||| ||||||||||||| || || |||||| ||||||||           ||  |||| ||      |||| |    |  | |   ||      | || | ||||     | ||     | |||    ||| ||||
ATACTCTACTTTATTGGGTTTGGTTTTTTCTGCATTGAATCACTGCTGAGCATTTGGGTTATTCAGgttt----------ttaatagtccta--aactctaccat-ggtgcattctcttggctctagtgttttct----ttgttgacatttaatttatatacgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32245481|gb|CD711300.1|CD711300
EST:     GATTGTTCTGCCTTGAATCACTGCTCAGTATGTGGGTTGTTCAG                         CAAGTTTACATGTACTTCCGAGGCAGCGGCAAGGCTCAAGAGATAAAGCGT
genomic: GATTGTTCTGCCTTGAATCACTGCTCAGTATCTGGGTTGTTCAGgttcagtagt ... caatatgcagCAAGTTTACATGTACTTCCGAGGCAGTGGCAAGGCTCAAGAGATAAAGCGT
EST: gi|110418607|gb|EC984768.1|EC984768
EST:     GATTTGGATTGTTCTGCCTTGAATCACTGCTCAGTATCTGGGTTGTTCAG                         CAAGTTTACATGTACTTCCGAGGCAGTGGCAAGGCTCAAGAGATAAAGCGT
genomic: GATTTGGATTGTTCTGCCTTGAATCACTGCTCAGTATCTGGGTTGTTCAGgttcagtagt ... caatatgcagCAAGTTTACATGTACTTCCGAGGCAGTGGCAAGGCTCAAGAGATAAAGCGT
EST: gi|110385536|gb|EC950069.1|EC950069
EST:     GATTTGGATTGTTCTGCCTTGAATCACTGCTCAGTATCTGGGTTGTTCAG                         CAAGTTTACATGTACTTCCGAGGCAGCGGCAAGGCTCAAGAGATAAAGCGT
genomic: GATTTGGATTGTTCTGCCTTGAATCACTGCTCAGTATCTGGGTTGTTCAGgttcagtagt ... caatatgcagCAAGTTTACATGTACTTCCGAGGCAGTGGCAAGGCTCAAGAGATAAAGCGT
EST: gi|110394878|gb|EC960262.1|EC960262
EST:     GATTTGGATTGTTCTGCCTTGAATCACTGCTCAGTATCTGGGTTGTTCAG                         CAAGTTTACATGTACTTCCGAGGCAGTGGCAAGGCTCAAGAGATAAAGCGT
genomic: GATTTGGATTGTTCTGCCTTGAATCACTGCTCAGTATCTGGGTTGTTCAGgttcagtagt ... caatatgcagCAAGTTTACATGTACTTCCGAGGCAGTGGCAAGGCTCAAGAGATAAAGCGT
EST: gi|110388736|gb|EC953515.1|EC953515
EST:     GATTTGGATTGTTCTGCCTTGAATCACTGCTCAGTATCTGGGTTGTTCAG                         CAAGTTTACATGTACTTCCGAGGCAGCGGCAAGGCTCAAGAGATAAAGCGT
genomic: GATTTGGATTGTTCTGCCTTGAATCACTGCTCAGTATCTGGGTTGTTCAGgttcagtagt ... caatatgcagCAAGTTTACATGTACTTCCGAGGCAGTGGCAAGGCTCAAGAGATAAAGCGT
EST: gi|110376126|gb|EC941168.1|EC941168
EST:     GATTTGGATTGTTCTGCCTTGAATCACTGCTCAGTATCTGGGTTGTTCAG                         CAAGTTTACATGTACTTC
genomic: GATTTGGATTGTTCTGCCTTGAATCACTGCTCAGTATCTGGGTTGTTCAGgttcagtagt ... caatatgcagCAAGTTTACATGTACTTC
EST: gi|32246966|gb|CD712785.1|CD712785
EST:     GATTTGGATTGTTCTGCCTTGAATCACTGCTCAGTATCTGGGTTGTTCAG                         CAAGTTTACATGTACTTCCGAGGCAGTGGCAAGGCTCAAGAGATAAAGCGT
genomic: GATTTGGATTGTTCTGCCTTGAATCACTGCTCAGTATCTGGGTTGTTCAGgttcagtagt ... caatatgcagCAAGTTTACATGTACTTCCGAGGCAGTGGCAAGGCTCAAGAGATAAAGCGT
EST: gi|32245954|gb|CD711773.1|CD711773
EST:     GATTTGGATTGTTCTGCCTTGAATCACTGCTCAGTATCTGGGTTGTTCAG                         CAAGTTTACATGTACTTCCGAGGCAGCGGCAAGGCTCAAGAGATAAAGCGT
genomic: GATTTGGATTGTTCTGCCTTGAATCACTGCTCAGTATCTGGGTTGTTCAGgttcagtagt ... caatatgcagCAAGTTTACATGTACTTCCGAGGCAGTGGCAAGGCTCAAGAGATAAAGCGT
EST: gi|71870414|gb|DT019469.1|DT019469
EST:     GATTTGGATTGTTCTGCCTTGAATCACTGCTCAGTATCTGGGTTGTTCAG                         CAAGTTTACATGTACTTC
genomic: GATTTGGATTGTTCTGCCTTGAATCACTGCTCAGTATCTGGGTTGTTCAGgttcagtagt ... caatatgcagCAAGTTTACATGTACTTC
EST: gi|110423904|gb|EC990257.1|EC990257
EST:     GATTTGGATTGTTCTGCCTTGAATCACTGCTCAGTATCTGGGTTGTTCAG                         CAAGTTTACATGTACTTCCGAGGCAGTGGCAAGGCTCAAGAGATAAAGCGT
genomic: GATTTGGATTGTTCTGCCTTGAATCACTGCTCAGTATCTGGGTTGTTCAGgttcagtagt ... caatatgcagCAAGTTTACATGTACTTCCGAGGCAGTGGCAAGGCTCAAGAGATAAAGCGT
EST: gi|71870410|gb|DT019465.1|DT019465
EST:     GATTTGGATTGTTCTGCCTTGAATCACTGCTCAGTATCTGGGTTGTTCAG                         CAAGTTTACATGTACTTCCGAGGCAG
genomic: GATTTGGATTGTTCTGCCTTGAATCACTGCTCAGTATCTGGGTTGTTCAGgttcagtagt ... caatatgcagCAAGTTTACATGTACTTCCGAGGCAG
EST: gi|110422592|gb|EC988919.1|EC988919
EST:     GATTTGGATTGTTCTGCCTTGAATCACTGCTCAGTATCTGGGTTGTTCAG                         CAAGTTTACATGTACTTCCGAGGCAGTGGCAAGGCTCAAGAGATAAAGCGT
genomic: GATTTGGATTGTTCTGCCTTGAATCACTGCTCAGTATCTGGGTTGTTCAGgttcagtagt ... caatatgcagCAAGTTTACATGTACTTCCGAGGCAGTGGCAAGGCTCAAGAGATAAAGCGT