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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTTTGACTACCTCTTTTATATTGATTTTGAGGCTTCTATGGCTGAGCCCCGTGCACAGACAGCTTTGGCACATCTTCAGgtttgttctaattatgcctcctaattttgcttttgactcatcccaccaaattctttataagcatttgtcaaagttccaaaagctttgtttgaagctattg...

Basic information

species Vitis vinifera
transcript Vv12s0059g00750.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0059g00750.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA12G31940.1 (Glycine max), 5'ss of exon 10
GTATTTTGACTACCTCTTTTATATTGATTTTGAGGCTTCTATGGCTGAGCCCCGTGCACAGACAGCTTTGGCACATCTTCAGgtttgttctaattatgcctcctaattt-tgcttttgact----catcccaccaaattctt-tataagcatttgtcaaagttccaaaagctttgtttgaagctattg
|||||| || ||||| || |||||||||||||| || |||||| |||||||||| ||||| || ||||| | |||||| ||||| ||||||   |   | || || ||| || |||  |||     ||  |     |||||| | | ||| ||| ||     ||  |     |  |||    | ||| 
GTATTTCGATTACCTTTTCTATATTGATTTTGATGCGTCTATGACTGAGCCCCGAGCACAAACTGCTTTAGGACATCTGCAGgtatgttct---ttgacttcttattttatgatttgaactacagtatgtcttttgattcttctcttagcttttatctc--ctcttaggagatcatttttttcaatt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27583171|gb|CB005866.1|CB005866
EST:     AGGCTTCTATGGCTGAGCCCCGTGCACAGACAGCTTTGGCACATCTTCAG                         GAGTTTGCCACATTTCTCCGTGTACTTGGTTGCTATCCTATGGATTCCTTT
genomic: AGGCTTCTATGGCTGAGCCCCGTGCACAGACAGCTTTGGCACATCTTCAGgtttgttcta ... ttttttgcagGAGTTTGCCACATTTCTCCGTGTACTTGGTTGCTATCCTATGGATTCCTTT
EST: gi|46910391|gb|CN545766.1|CN545766
EST:     AGGCTTCTATGGCTGAGCCCCGTGCACAGACAGCTTTGGCACATCTTCAG                         GAGTTTGCCACATTTCTCCGTGTACTTGGTTGCTATCCTATGGATTCCTTT
genomic: AGGCTTCTATGGCTGAGCCCCGTGCACAGACAGCTTTGGCACATCTTCAGgtttgttcta ... ttttttgcagGAGTTTGCCACATTTCTCCGTGTACTTGGTTGCTATCCTATGGATTCCTTT
EST: gi|30129079|gb|CB914418.1|CB914418
EST:     AGGCTTCTATGGCTGAGCCCCGTGCACAGACAGCTTTGGCACATCTTCAG                         GAGTTTGCCACATTTCTCCGTGTACTTGGTTGCTATCCTATGGATTCCTTT
genomic: AGGCTTCTATGGCTGAGCCCCGTGCACAGACAGCTTTGGCACATCTTCAGgtttgttcta ... ttttttgcagGAGTTTGCCACATTTCTCCGTGTACTTGGTTGCTATCCTATGGATTCCTTT
EST: gi|51052564|gb|CO819624.1|CO819624
EST:     AGGCTTCTATGGCTGAGCCCCGTGCACAGACAGCTTTGGCACATCTTCAG                         GAGTTTGCCACATTTCTCCGTGTACTTGGTTGCTATCCTATGGATTCCTTT
genomic: AGGCTTCTATGGCTGAGCCCCGTGCACAGACAGCTTTGGCACATCTTCAGgtttgttcta ... ttttttgcagGAGTTTGCCACATTTCTCCGTGTACTTGGTTGCTATCCTATGGATTCCTTT
EST: gi|110418797|gb|EC984974.1|EC984974
EST:     AGGCTTCTATGGCTGAGCCCCGTGCACAGACAGCTTTGGCACATCTTCAG                         GAGTTTGCCACATTTCTCCGTGTACTTGGTTGCTATCCTATGGATTCCTTT
genomic: AGGCTTCTATGGCTGAGCCCCGTGCACAGACAGCTTTGGCACATCTTCAGgtttgttcta ... ttttttgcagGAGTTTGCCACATTTCTCCGTGTACTTGGTTGCTATCCTATGGATTCCTTT
EST: gi|30329365|gb|CD012627.1|CD012627
EST:     AGGCTTCTATGGCTGAGCCCCGTGCACAGACAGCTTTGGCACATCTTCAG                         GAGTTTGCCACATTTATCCGTGTACTTGGTTGCTATCCTATGGATTCCTTT
genomic: AGGCTTCTATGGCTGAGCCCCGTGCACAGACAGCTTTGGCACATCTTCAGgtttgttcta ... ttttttgcagGAGTTTGCCACATTTCTCCGTGTACTTGGTTGCTATCCTATGGATTCCTTT
EST: gi|110423979|gb|EC990332.1|EC990332
EST:     GCCCCGTGCACAGACAGCTTTGGCACATCTTCAG                         GAGTTTGCCACATTTCTCCGTGTACTTGGTTGCTATCCTATGGATTCCTTT
genomic: GCCCCGTGCACAGACAGCTTTGGCACATCTTCAGgtttgttcta ... ttttttgcagGAGTTTGCCACATTTCTCCGTGTACTTGGTTGCTATCCTATGGATTCCTTT