Sequence
atgc intronic sequence ATGC exonic sequenceGGTGTATGAAGAAGTTAAGAAAGCTGTTGAGAGAGACCGGTCAATGGTGAAAGTTTCTGAATTGTCTAGGCATGGGCTTATGGAAATAACCAGAAAGAGGgtatgttactaagttatgtggctatttttttttttttggcttttaattcccaaaaattatcctaaaagtgatttggaaactgccatactcagatattaaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0057g01320.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA02G38840.1 (Glycine max), 5'ss of exon 11
GGTGTATGAAGAAGTTAAGAAAGCTGTTGAGAGAGACCGGTCAATGGTGAAAGTTTCTGAATTGTCTAGGCATGGGCTTATGGAAATAACCAGAAAGAGGgtatgttactaagttatgtggctatttttttttttttggcttttaattcccaaaaattatcctaaaagtgatttggaaactgccatactcagatattaaa---
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CGTCTATGAAGAAGTCAAGAAAGCCATTGAGAGAGATAGATCAATGGTGAAGGTCTCTGAATTGTCTAGACATGGACTTATGGAAATAACTCGAAAGAGGgtatgttgcttgtctatg--gtgaatattagccatttgttatcccattatcagagacaagtgtggaaatagaaagatgtgtttcatagg-aaacatcaagcga
upper sequence: Vv12s0057g01320.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA14G36910.1 (Glycine max), 5'ss of exon 12
GGTGTATGAAGAAGTTAAGAAAGCTGTTGAGAGAGACCGGTCAATGGTGAAAGTTTCTGAATTGTCTAGGCATGGGCTTATGGAAATAACCAGAAAGAGGgtatgttactaagttatgtggctatttttttttttttggcttttaattcccaaaaattatcctaaaagtgatttggaaactgccatactcagatattaaa----
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GGTCTATGAAGAAGTCAAGAAAGCCATTGAGAGAGATAGATCAATGGTGAAGGTCTCTGAATTGTCTAGACATGGACTTATGGAAATAACTCGAAAAAGGgtatgttgcttgtctatg--gtgaatattagccatttgttatcccattatcagagacaagtgtggaaaagaaagatgtgtt-tcata-tgaaacatcaagcgac
upper sequence: Vv12s0057g01320.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT2G04270.4 (Arabidopsis thaliana), 5'ss of exon 8
GGTGTATGAAGAAGTTAAGAAAGCTGTTGAGAGAGACCGGTCAATGGTGAAAGTTTCTGAATTGTCTAGGCATGGGCTTATGGAAATAACCAGAAAGAGGgtatgttactaagttatg--tggctatttttttttttttggcttttaattcccaaaaattatccta-aaagtgatttggaaactgccatactcag-atattaaa----------------
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CGTTTATGAAGAGGTTAAGAAAGCCGTGGAGAGAGATAGGTCACTGGTAAAAGTATCAGAGCTGTCTAGACACGGACTTATGGAGATAACAAGAAAAAGGgtatagtcccaacttgtggatgtttatctctttctgtagagcttctaatt---aattcttttggcatagcacgccccctcgatt--tatacttattgtagtgaatctatttttttcacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18459499|gb|BM437777.1|BM437777EST: AAGTTTCTGAATTGTCTAGGCATGGGCTTATGGAAATAACCAGAAAGAGG GTTCGACCTAGTGTGACGTTTATGATTAGCGAACCTTGCAGTTGCTGTCAC
genomic: AAGTTTCTGAATTGTCTAGGCATGGGCTTATGGAAATAACCAGAAAGAGGgtatgttact ... tgctgagcagGTTCGACCTAGTGTGACGTTTATGATTAGCGAACCTTGCAGTTGCTGTCAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTGTATGAAGAAGTTAAGAAAGCTGTTGAGAGAGACCGGTCAATGGTGAAAGTTTCTGAATTGTCTAGGCATGGGCTTATGGAAATAACCAGAAAGAGGgtatgttactaagttatgtggctatttttttttttttggcttttaattcccaaaaattatcctaaaagtgatttggaaactgccatactcagatattaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttggaaa