1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
ATTTACTACAGCTCCAGCCCTTGCAATTCCAAAAGCTATTTCAAATGCAGGCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagtttttatgcattgatcttcaacacaatcacaaactcatttgttcaatctatgaattcacaatcttattttgtcacattggatctgcag
species | Vitis vinifera |
transcript | Vv12s0057g01200.t01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCCEST: gi|30130059|gb|CB915398.1|CB915398
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
EST: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCCEST: gi|71876405|gb|DT025460.1|DT025460
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
EST: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCCEST: gi|30129594|gb|CB914933.1|CB914933
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
EST: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCCEST: gi|110700654|gb|EE077500.1|EE077500
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
EST: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCCEST: gi|349833317|gb|FQ416695.1|FQ416695
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
EST: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCCEST: gi|110368276|gb|EC932247.1|EC932247
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
EST: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCCEST: gi|110371396|gb|EC935385.1|EC935385
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
EST: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCCEST: gi|27584750|gb|CB007445.1|CB007445
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
EST: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCCEST: gi|33402805|gb|CF208432.1|CF208432
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
EST: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCCEST: gi|110361968|gb|EC925474.1|EC925474
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
EST: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCCEST: gi|30133750|gb|CB919089.1|CB919089
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
EST: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCCEST: gi|26259676|gb|CA810739.1|CA810739
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
EST: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCCEST: gi|110361336|gb|EC924802.1|EC924802
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
EST: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCCEST: gi|110362059|gb|EC925566.1|EC925566
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
EST: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCCEST: gi|110357331|gb|EC920800.1|EC920800
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
EST: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCCEST: gi|32246227|gb|CD712046.1|CD712046
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
EST: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCCEST: gi|33403297|gb|CF208924.1|CF208924
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
EST: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCCEST: gi|110723122|gb|EE100072.1|EE100072
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
EST: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT GTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
genomic: GCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagttttt ... ggatctgcagGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAGTCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTACTACAGCTCCAGCCCTTGCAATTCCAAAAGCTATTTCAAATGCAGGCTTGGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTgtaagtttttatgcattgatcttcaacacaatcacaaactcatttgttcaatctatgaattcacaatcttattttgtcacattggatctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC