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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAATGGATAAAGTCTCACGACATGGAACCTTAAGAAATATCAAGCTTAGCTTTGTTGGGCATTCCATCGGAAATGTTATTATTAGAACTGCATTGGCAGgtaggtactctagttttgattcttgaatgccatgttcttaggttagtctgtgatatattgctgatgtctgttgctttgttttggcag

Basic information

species Vitis vinifera
transcript Vv12s0055g00430.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0055g00430.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os11g06690.1 (Oryza sativa), 5'ss of exon 9
AAAATGGATAAAGTCTCACGACATGGAACCTTAAGAAATATCAAGCTTAGCTTTGTTGGGCATTCCATCGGAAATGTTATTATTAGAACTGCATTGGCAGgtaggtactctagttttgattcttgaatgccatgttcttaggttagtctgtgatatattgctgatgtctgttgctttgttttggcag
||||| ||||     ||| || |||||  ||  | | || | ||||||||||||||||| |||||||| |||||  ||||||| |||| |||  | |||||||| |  || |  |||  |||   |     ||||   | | |  |||||   ||  |  |   |   |     ||   ||   |||
AAAATTGATAGGTATTCAAGAAATGGAGGCTGCAAAGATTTGAAGCTTAGCTTTGTTGGTCATTCCATTGGAAACATTATTATCAGAAGTGCCCTAGCAGgtagtttttccaactttacttccaaa----tatgtagctggctctgtctg-actaactaaccagttctt-----ttccattcaacag

upper sequence: Vv12s0055g00430.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA15G05480.1 (Glycine max), 5'ss of exon 15
AAAATGGATAAAGTCTCACGACATGGAACCTTAAGAAATATCAAGCTTAGCTTTGTTGGGCATTCCATCGGAAATGTTATTATTAGAACTGCATTGGCAGgtaggtac-tctagttttgattcttgaatgccatgttcttaggttagtctg-tgatatattgctgatgtctgttgctttgttttggcag---
|| ||||||||||  ||| ||  ||||| ||||| | |||||||||||||||||||||| ||||| || || ||| | || || ||| |||| ||||||||||  ||| | |||||||||    || |    |  | |  |    | |||  |  |       | ||||   ||  ||  ||||        
AAGATGGATAAAGCTTCAAGAGTTGGAAACTTAAAAGATATCAAGCTTAGCTTTGTTGGCCATTCTATTGGGAATCTCATCATCAGAGCTGCTTTGGCAGgtatttacatatagttttgaacaatggagaata-atacccatcaaaatctaatattgggacagtaatgtgccttttttatttttaatttcag

upper sequence: Vv12s0055g00430.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA08G08190.3 (Glycine max), 5'ss of exon 13
AAAATGGATAAAGTCTCACGACATGGAACCTTAAGAAATATCAAGCTTAGCTTTGTTGGGCATTCCATCGGAAATGTTATTATTAGAACTGCATTGGCAGgtaggtactct---agttttgattcttgaatgccatgttcttaggttagtctgtgatatattgctgatgtctgttgctttgttttggcag------------------------------------------------------------------------------------------------------------
|| ||||||||||  ||| || |||||| ||| | | |||||||||||||||||||||| ||||| || || ||| | ||||| || || || ||| ||||||  ||  |    |||||| |    | | | | ||   |  |  |||  ||  |  |  |  |     | | ||  ||| |||    |                                                                                                             
AAGATGGATAAAGCTTCAAGAAATGGAAACTTGAAAGATATCAAGCTTAGCTTTGTTGGTCATTCTATTGGGAATCTCATTATCAGGACAGCCTTGACAGgtatctaagcgcaaagtttttaaggataactactattcacaaaaattaaactagggaaagtaacatgcttattttattttatttaaataattccagagagcgtcatggagccatatctaagatacttacatacatatgtctccatatcgggtccacacttgggttatatgtatagttcaaactctctattcaattcag

upper sequence: Vv12s0055g00430.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA08G08190.1 (Glycine max), 5'ss of exon 13
AAAATGGATAAAGTCTCACGACATGGAACCTTAAGAAATATCAAGCTTAGCTTTGTTGGGCATTCCATCGGAAATGTTATTATTAGAACTGCATTGGCAGgtaggtactc---tagttttgattcttgaatgccatgttcttaggttagtctgtgatatattgctgatgtctgttgctttgttttggcag------
|| ||||||||||  ||| || |||||| ||| | | |||||||||||||||||||||| ||||| || || ||| | ||||| || || || ||| ||||||  ||  |    |||||| |    | | | | ||   |  |  |||  ||  |  |  |  |     | | ||  ||| |||    |       
AAGATGGATAAAGCTTCAAGAAATGGAAACTTGAAAGATATCAAGCTTAGCTTTGTTGGTCATTCTATTGGGAATCTCATTATCAGGACAGCCTTGACAGgtatctaagcgcaaagtttttaaggataactactattcacaaaaattaaactagggaaagtaacatgcttattttattttatttaaataattccag