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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCCCACAGGTTGGAACTCAAGTAAAGCCACGGGATGAGCTGTTTTGGTTTGGAAAACCAGAAATATTGTTACGGTTGATACAATTTATCATATTTCAGgtgatgatgatgatattcacaacttgtgttttatatatgaccttggttatttctctatcttggattataaccctcattgtgtttcttgtgtatgcag

Basic information

species Vitis vinifera
transcript Vv12s0035g00260.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0035g00260.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA08G20120.1 (Glycine max), 5'ss of exon 11
AGGCCCACAGGTTGGAACTCAAGTAAAGCCACGGGATGAGCTGTTTTGGTTTGGAAAACCAGAAATATTGTTACGGTTGATACAATTTATCATATTTCAGgtgatga-tgatgatattcacaacttgtgttttatatatgaccttggttatttctctatcttggattataaccctcattgtgtttcttgtgtatgcag
||| |||   | | | || |||||||||||||| ||||| || ||||||||   |||||| || ||| ||||| || ||||||||||| ||||||||||||| |  | |||| | |  ||  | ||||  |      |||    ||  |  || | |   |||          || ||| | | |  |||  ||||||
AGGTCCATCTGCTCGGACACAAGTAAAGCCACGTGATGAACTTTTTTGGTTCAAAAAACCGGATATACTGTTATGGGTGATACAATTTGTCATATTTCAGgtaaaaaatgataaca--cattatttgtagtcgggtcatg---ctgcatgattgtgttctttg--------ttcttattttctctactgttcatgcag

upper sequence: Vv12s0035g00260.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT1G11000.1 (Arabidopsis thaliana), 5'ss of exon 11
AGGCCCACAGGTTGGAACTCAAGTAAAGCCACGGGATGAGCTGTTTTGGTTTGGAAAACCAGAAATATTGTTACGGTTGATACAATTTATCATATTTCAGgtgatgatgatgatattcacaacttgtgttttatatatgaccttggttatttctctatcttggattataaccctcattgtgtttcttgtgtatgcag
|||| ||     |||  ||||||| || ||||| |||| ||| || |||||||| |||||||||||  || |||||||||||||||||||||| |||||||| |  |  | ||  ||  |    |   || |  |     || || | ||| ||||||        || | ||| ||  | |||| ||   ||||||
AGGCACATCTAATGGGGCTCAAGTCAAACCACGTGATGGGCTCTTCTGGTTTGGGAAACCAGAAATTCTGCTACGGTTGATACAATTTATCATTTTTCAGgtaagcaaaaagacttttcctttctcaattcttca---agccatgat-attactctattcacacagatgatccttat-atatttcctgctaatgcag