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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGTATCTTATTTTTTCTCTTTGAATTTTATGATGATCAACTATTGGCATTCATGGTCTTAATTCTTGTCTGGTTGTGCGAGCTATTTACACTGATCAGgtctctctctctttctctctctatgatatatgtttatatatatatatctatatatatatatatatattatgtatgtttgtgtatgtgtatatgtatatacacatgcataaatattatatatctgtttgtatttttatataagtctcctactaatattattatacttggcatttgcttgcag

Basic information

species Vitis vinifera
transcript Vv12s0034g02140.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0034g02140.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA15G05080.1 (Glycine max), 5'ss of exon 11
TTGGTATCTTATTTTTTCTCTTTGAATTTTATGATGATCAACTATTGGCATTCATGGTCTTAATTCTTGTCTGGTTGTGCGAGCTATTTACACTGATCAGgtctctctctctttctctctctatgatatatgtttatatatatatatctatatatatatatatatattatgtatgtttgtgtatgtgtatatgtatatacacatgcataaatattatatatctgtttgtatttttatataagtctcctactaatattattatacttggcatttgcttgcag
|||| ||  | |||||||||||||| |||||||||||||| ||| | || ||||||||||| ||||||||||||||||| || || ||||| || ||||||||||||||||| ||||||||| | || ||||| |||||||     | | |   ||   |  ||| |||| || | | |  | | ||   ||| |  |     ||| |||| |                                                                    
TTGGCATTCTGTTTTTTCTCTTTGAGTTTTATGATGATCAGCTACTTGCCTTCATGGTCTTGATTCTTGTCTGGTTGTGTGAACTTTTTACTCTCATCAGgtctctctctctctctctctctct-atgtatgtatatatat-----tatgtgagtaatcaagtatgttat-taagatagcatgtctg---atgaacttgt---tgcttaaaaa--------------------------------------------------------------------

upper sequence: Vv12s0034g02140.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA08G19970.1 (Glycine max), 5'ss of exon 11
TTGGTATCTTATTTTTTCTCTTTGAATTTTATGATGATCAACTATTGGCATTCATGGTCTTAATTCTTGTCTGGTTGTGCGAGCTATTTACACTGATCAGgtctctctctctttctctctctatgatatatgtttatatatatatatctatatatatatatatatattatgtatgtttgtgtatgtgtatatgtatatacacatgcataaatattatatatctgtttgtatttttatataagtctcctactaatattattatacttggcatttgcttgcag
|||| ||  | |||||||||||||| |||||||||||||| ||| | || ||||||||||| ||||||||||||||||| || || ||||| || || |||||| | ||||||| |||||| ||  ||| ||  ||   |  ||| | ||| || | |     || |   ||  ||||||   ||   | |  |   ||    ||  |||||                                                                     
TTGGCATTCTGTTTTTTCTCTTTGAGTTTTATGATGATCAGCTACTTGCTTTCATGGTCTTGATTCTTGTCTGGTTGTGTGAACTTTTTACTCTCATTAGgtctgtttctcttt-tctctcaatattatgtgagtaatcaagtatgt-tatttagaca---gcatgtccggtgggtttgt---tgctcaaaaat---tatttttg-gtaaat---------------------------------------------------------------------